Co-expression analysis

Gene ID PtpAffx.38755.2.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=2e-56)
Module size 7 genes
NF 0.58
%ile 88.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6187.00.95PtpAffx.38755.2.S1_s_atCV252052hypothetical protein-2e-56At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.7794.90.95PtpAffx.1601.13.S1_a_atCV240068hypothetical protein-5e+0At5g44306unknown proteinO.I.H.G.S.X.
0.6791.10.95PtpAffx.5090.1.A1_atCV267261hypothetical protein-1e-1At3g09810isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.6086.00.94PtpAffx.147676.1.A1_atCV230317hypothetical protein-3e-32At4g30600signal recognition particle receptor alpha subunit family proteinO.I.H.G.S.X.
0.5683.90.94PtpAffx.222478.1.S1_atpmrna39929hypothetical protein-1e-48At1g67190F-box family proteinO.I.H.G.S.X.
0.3863.70.95Ptp.4510.1.S1_atCV261413hypothetical protein-1e-8At1g14140mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3153.70.96PtpAffx.4085.4.S1_atCV244302hypothetical protein-3e-71At3g59350serine/threonine protein kinase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.590.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.92317.1.S1_at, orthologous to the query gene, PtpAffx.38755.2.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.98100.0GmaAffx.92317.1.S1_atAt3g49870--2e-54At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.5071.7Gma.16130.1.S1_atAt3g49870--5e-4At1g63500ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.5071.7Gma.2528.1.S1_atAt3g49870--2e-7At3g26780catalyticO.I.H.G.S.X.
0.4867.7Gma.8354.1.S1_atAt3g49870--4e-22At3g03070NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.4665.5GmaAffx.33280.1.S1_atAt3g49870--2e-8At5g22875unknown proteinO.I.H.G.S.X.
0.4563.9Gma.3012.1.A1_atAt3g49870--2e-6At2g13690PRLI-interacting factor, putativeO.I.H.G.S.X.
0.4463.3Gma.6745.1.S1_atAt3g49870--8e+0At5g37570pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4463.3Gma.5103.1.S1_atAt3g49870--2e-59At1g80500-O.I.H.G.S.X.
0.4360.6GmaAffx.89701.1.A1_s_atAt3g49870--7e-11At1g15370-O.I.H.G.S.X.
0.4158.1Gma.1863.1.S1_atAt3g49870--4e-11At5g37510EMB1467 (embryo defective 1467)O.I.H.G.S.X.
0.4158.1GmaAffx.48531.1.S1_atAt3g49870--3e-13At1g54390PHD finger protein-relatedO.I.H.G.S.X.
0.4057.1Gma.13032.1.S1_atAt3g49870--1e-3At4g26710ATP synthase subunit H family proteinO.I.H.G.S.X.
0.4057.1GmaAffx.12534.1.A1_atAt3g49870--1e-1At3g53200AtMYB27 (myb domain protein 27)O.I.H.G.S.X.
0.3853.3Gma.1434.1.S1_atAt3g49870--0At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.3751.7GmaAffx.86632.1.S1_atAt3g49870--9e-2At5g53045-O.I.H.G.S.X.
0.3751.7GmaAffx.87332.1.S1_s_atAt3g49870--5e-35At1g09330unknown proteinO.I.H.G.S.X.
0.3548.6Gma.5712.1.S1_atAt3g49870--2e+0At3g12260complex 1 family protein / LVR family proteinO.I.H.G.S.X.
0.3548.6Gma.17869.1.S1_atAt3g49870--1e+0At1g61250SC3 (SECRETORY CARRIER 3)O.I.H.G.S.X.
0.3346.1Gma.3660.1.S1_atAt3g49870--1e-20At1g25520unknown proteinO.I.H.G.S.X.
0.3142.2Gma.3652.1.S1_a_atAt3g49870--4e-10At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.3142.2Gma.9858.1.S1_atAt3g49870--2e-13At3g55005TON1B (tonneau 1b)O.I.H.G.S.X.
0.3040.4Gma.5762.1.S1_atAt3g49870aminoalcoholphosphotransferase-2e-47At1g13560AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)O.I.H.G.S.X.
0.3040.4Gma.9587.1.A1_atAt3g49870--6e+0At5g47060senescence-associated protein-relatedO.I.H.G.S.X.
0.2939.0Gma.1623.1.S1_atAt3g49870--3e-50At2g20580RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)O.I.H.G.S.X.
0.2939.0GmaAffx.51048.1.S1_s_atAt3g49870--6e-5At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.2939.0Gma.3441.1.S1_atAt3g49870--4e-1At1g14205ribosomal protein L18 family proteinO.I.H.G.S.X.
0.2939.0GmaAffx.92496.1.S1_s_atAt3g49870--1e-75At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.H.G.S.X.
0.2839.0Gma.1846.1.S1_atAt3g49870--1e-63At1g61150-O.I.H.G.S.X.
0.2735.7Gma.4037.1.S1_atAt3g49870--2e-177At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)O.I.H.G.S.X.
0.2735.7Gma.10247.1.S1_atAt3g49870--6e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.2633.9GmaAffx.39534.1.S1_atAt3g49870--2e-9At3g08980signal peptidase I family proteinO.I.H.G.S.X.
0.2633.9Gma.2731.5.S1_s_atAt3g49870--3e-17At3g10860ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeO.I.H.G.S.X.
0.2633.9Gma.8354.1.S1_s_atAt3g49870--4e-22At3g03070NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.2532.6Gma.13295.1.S1_atAt3g49870--9e-46At5g53180PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)O.I.H.G.S.X.
0.2532.6Gma.16985.1.S1_atAt3g49870--1e-9At2g47700zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2430.9Gma.6495.1.S1_atAt3g49870--5e-51At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.2228.1Gma.8460.1.S1_atAt3g49870acyl-CoA oxidase-7e-39At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.2228.1Gma.13346.1.S1_atAt3g49870--6e-12At1g61780postsynaptic protein-relatedO.I.H.G.S.X.
0.2025.1Gma.4335.1.S1_atAt3g49870--8e-3At2g17190ubiquitin family proteinO.I.H.G.S.X.
0.1721.2Gma.8562.1.S1_atAt3g49870--2e-22At1g02100leucine carboxyl methyltransferase family proteinO.I.H.G.S.X.
0.1518.7Gma.1837.1.S1_atAt3g49870--7e-9At1g71900-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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