CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.38755.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=7e-21)

Module size 6 genes

NF 0.37

%ile 63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 0.96 PtpAffx.38755.1.A1_at CV260007 hypothetical protein - 7e-21 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) O.I. H.G. S.X.
0.61 87.0 0.96 PtpAffx.249.158.S1_a_at CV234195 hypothetical protein - 9e-23 At4g20150 unknown protein O.I. H.G. S.X.
0.40 67.0 0.96 Ptp.2022.1.S1_s_at CV258781 hypothetical protein - 9e-6 At5g14240 - O.I. H.G. S.X.
0.32 55.2 0.96 PtpAffx.59972.2.S1_a_at CX169696 hypothetical protein - 2e-9 At1g48160 signal recognition particle 19 kDa protein, putative / SRP19, putative O.I. H.G. S.X.
0.23 40.5 0.96 PtpAffx.88808.1.A1_at CV251825 - - 5e+0 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) O.I. H.G. S.X.
0.22 38.3 0.96 PtpAffx.146199.1.A1_s_at CV272864 hypothetical protein - 2e-1 At2g16860 GCIP-interacting family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.95	PtpAffx.2334.2.A1_a_at	CV245546	hypothetical protein	-	2e-28	At1g17890	GER2	O.I.	H.G.	S.X.
0.53	80.5	0.92	PtpAffx.211850.1.S1_s_at	pmrna23254	hypothetical protein	-	2e-33	At3g23690	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.220030.1.S1_at	pmrna36285	hypothetical protein	-	9e-3	At5g46560	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.95	PtpAffx.52853.1.A1_at	DN484702	hypothetical protein	-	6e+0	At2g45820	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.44	71.9	0.95	Ptp.1085.1.A1_s_at	CV274230	hypothetical protein	-	7e-37	At5g42320	metallocarboxypeptidase/ zinc ion binding	O.I.	H.G.	S.X.
0.44	71.9	0.95	PtpAffx.17445.1.S1_a_at	CK090987	hypothetical protein	-	7e-75	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.
0.40	67.0	0.94	PtpAffx.88445.1.A1_at	CV266615	-	-	5e-12	At5g14105	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.96	PtpAffx.18334.1.A1_at	CV232661	hypothetical protein	-	2e-57	At1g32130	-	O.I.	H.G.	S.X.
0.36	61.6	0.93	PtpAffx.2070.1.S1_at	CK091000	hypothetical protein	-	1e+0	At3g27350	unknown protein	O.I.	H.G.	S.X.
0.32	55.2	0.92	PtpAffx.46455.1.S1_a_at	BU882743	hypothetical protein	-	4e-11	At1g68000	ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1)	O.I.	H.G.	S.X.
0.31	53.7	0.94	PtpAffx.208831.1.S1_at	pmrna17510	chromatin remodeling complex subunit	-	7e-107	At2g02090	ETL1	O.I.	H.G.	S.X.
0.29	50.5	0.90	PtpAffx.143705.2.S1_s_at	BU874640	hypothetical protein	-	1e-7	At4g03560	ATTPC1 (TWO-PORE CHANNEL 1)	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.133839.1.A1_at	CV260062	hypothetical protein	-	2e+0	At3g47590	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.145273.2.A1_at	CV225543	-	-	1e-12	At4g08960	phosphotyrosyl phosphatase activator (PTPA) family protein	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.215965.1.S1_at	pmrna30452	hypothetical protein	-	7e-31	At4g15770	RNA binding / protein binding	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.219981.1.S1_at	pmrna36192	hypothetical protein	-	3e+0	At5g48240	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.66923.1.S1_at	CV229924	hypothetical protein	-	7e-10	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.27	47.1	0.95	PtpAffx.203383.1.S1_at	pmrna6729	hypothetical protein	-	4e-35	At5g13390	NEF1 (NO EXINE FORMATION 1)	O.I.	H.G.	S.X.
0.25	43.6	0.90	PtpAffx.82510.5.A1_at	CV243891	-	-	1e-1	At5g08450	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.6 96.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5 90.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7 85.5 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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