Co-expression analysis

Gene ID	PtpAffx.38755.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=7e-21)
Module size	6 genes
NF	0.37
%ile	63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.96	PtpAffx.38755.1.A1_at	CV260007	hypothetical protein	-	7e-21	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	PtpAffx.249.158.S1_a_at	CV234195	hypothetical protein	-	9e-23	At4g20150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.2022.1.S1_s_at	CV258781	hypothetical protein	-	9e-6	At5g14240	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.59972.2.S1_a_at	CX169696	hypothetical protein	-	2e-9	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.88808.1.A1_at	CV251825	-	-	5e+0	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.96	PtpAffx.146199.1.A1_s_at	CV272864	hypothetical protein	-	2e-1	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.6	96.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1607646_at, orthologous to the query gene, PtpAffx.38755.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.8	1607646_at	At3g49870	hypothetical protein LOC100244584	-	7e-59	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1609620_at	At3g49870	-	-	7e+0	At5g51845	-	O.I.	H.G.	S.X.	Please select
0.51	73.2	1621288_at	At3g49870	hypothetical protein LOC100252015	-	2e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1607743_at	At3g49870	hypothetical protein LOC100252303	-	5e-12	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1619148_at	At3g49870	hypothetical protein LOC100263958	-	6e-2	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613730_at	At3g49870	hypothetical protein LOC100264670	-	2e-43	At2g26460	RED family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1614091_at	At3g49870	hypothetical protein LOC100253367	-	4e-12	At5g25230	elongation factor Tu family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1606771_at	At3g49870	-	-	3e-39	At4g00660	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.42	60.1	1614002_at	At3g49870	hypothetical protein LOC100242874	-	6e-3	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1612222_at	At3g49870	hypothetical protein LOC100244118	-	1e-3	At1g16560	Per1-like family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1613361_s_at	At3g49870	hypothetical protein LOC100242707	-	4e-2	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1618602_at	At3g49870	hypothetical protein LOC100267246	-	4e-7	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.34	46.8	1615027_s_at	At3g49870	hypothetical protein LOC100246785	-	1e-15	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.33	45.7	1613303_at	At3g49870	similar to plectin-related	-	3e-16	At2g26770	plectin-related	O.I.	H.G.	S.X.	Please select
0.32	43.1	1618548_at	At3g49870	hypothetical protein LOC100246661	-	2e-20	At2g06990	HEN2 (hua enhancer 2)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1620963_at	At3g49870	hypothetical protein LOC100247592	-	7e-49	At5g58230	MSI1 (MULTICOPY SUPRESSOR OF IRA1)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1606841_s_at	At3g49870	similar to UBC13A/UBC35 (UBIQUITIN-CONJUGATING ENZYME35); protein binding / ubiquitin-protein ligase	-	1e-62	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1612043_at	At3g49870	hypothetical protein LOC100256975	-	5e-41	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1622482_at	At3g49870	hypothetical protein LOC100265772	-	3e-11	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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