Co-expression analysis

Gene ID	PtpAffx.38755.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=7e-21)
Module size	6 genes
NF	0.37
%ile	63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.96	PtpAffx.38755.1.A1_at	CV260007	hypothetical protein	-	7e-21	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	PtpAffx.249.158.S1_a_at	CV234195	hypothetical protein	-	9e-23	At4g20150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.2022.1.S1_s_at	CV258781	hypothetical protein	-	9e-6	At5g14240	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.59972.2.S1_a_at	CX169696	hypothetical protein	-	2e-9	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.88808.1.A1_at	CV251825	-	-	5e+0	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.96	PtpAffx.146199.1.A1_s_at	CV272864	hypothetical protein	-	2e-1	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.6	96.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8631.1.S1_at, orthologous to the query gene, PtpAffx.38755.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.3	Ta.8631.1.S1_at	At3g49870	-	-	8e-28	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.23.1.S1_at	At3g49870	Voltage dependent anion channel (VDAC)	-	6e-4	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.58	79.2	Ta.1536.1.S1_at	At3g49870	-	-	9e-4	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.4648.2.S1_x_at	At3g49870	-	-	3e-1	At1g72690	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.1031.1.A1_at	At3g49870	-	-	3e-30	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.20520.1.S1_at	At3g49870	-	-	3e-3	At3g62970	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.2285.1.S1_x_at	At3g49870	-	-	6e+0	At5g55010	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.5022.1.A1_x_at	At3g49870	-	-	8e-2	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.5022.1.A1_at	At3g49870	-	-	8e-2	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.2328.1.S1_at	At3g49870	-	-	7e+0	At3g52730	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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