CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.38755.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=7e-21)

Module size 6 genes

NF 0.37

%ile 63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 0.96 PtpAffx.38755.1.A1_at CV260007 hypothetical protein - 7e-21 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) O.I. H.G. S.X.
0.61 87.0 0.96 PtpAffx.249.158.S1_a_at CV234195 hypothetical protein - 9e-23 At4g20150 unknown protein O.I. H.G. S.X.
0.40 67.0 0.96 Ptp.2022.1.S1_s_at CV258781 hypothetical protein - 9e-6 At5g14240 - O.I. H.G. S.X.
0.32 55.2 0.96 PtpAffx.59972.2.S1_a_at CX169696 hypothetical protein - 2e-9 At1g48160 signal recognition particle 19 kDa protein, putative / SRP19, putative O.I. H.G. S.X.
0.23 40.5 0.96 PtpAffx.88808.1.A1_at CV251825 - - 5e+0 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) O.I. H.G. S.X.
0.22 38.3 0.96 PtpAffx.146199.1.A1_s_at CV272864 hypothetical protein - 2e-1 At2g16860 GCIP-interacting family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.6 96.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5 90.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7 85.5 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os03g0200800, orthologous to the query gene, PtpAffx.38755.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 Os03g0200800 At3g49870 - - 5e-35 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) O.I. H.G. S.X.
0.88 96.8 Os11g0127700 At3g49870 - Hypothetical protein 2e-1 At1g49480 RTV1 (related to vernalization1 1) O.I. H.G. S.X.
0.79 93.6 Os05g0593100 At3g49870 - Vacuolar ATP synthase subunit C (EC 3.6.3.14)(V-ATPase C subunit) (Vacuolar proton pump C subunit) 2e-10 At1g12840 DET3 (DE-ETIOLATED 3) O.I. H.G. S.X.
0.79 93.6 Os05g0106100 At3g49870 - Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14) 1e-38 At1g19910 AVA-P2 O.I. H.G. S.X.
0.74 91.4 Os11g0169900 At3g49870 - Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)(Fragment) 4e-63 At1g75630 AVA-P4 O.I. H.G. S.X.
0.65 83.8 Os10g0184300 At3g49870 - Hypothetical protein 1e-28 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) O.I. H.G. S.X.
0.64 83.4 Os04g0660600 At3g49870 - ATP synthase subunit H family protein 3e-10 At5g55290 ATP synthase subunit H family protein O.I. H.G. S.X.
0.64 83.4 Os06g0662000 At3g49870 - Vacuolar ATP synthase catalytic subunit A (EC3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pumpalpha subunit) (V-ATPase 69 kDa subunit) 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.58 77.0 Os12g0168900 At3g49870 - - 4e-51 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) O.I. H.G. S.X.
0.58 77.0 Os01g0610100 At3g49870 - Vacuolar ATP synthase 21 kDa proteolipid subunit(EC 3.6.3.14) (23-kDa subunit of V-ATPase) 4e-23 At2g25610 H+-transporting two-sector ATPase, C subunit family protein O.I. H.G. S.X.
0.57 77.0 Os06g0115100 At3g49870 - - 4e+0 At5g66005 Expressed protein O.I. H.G. S.X.
0.54 71.9 Os12g0123900 At3g49870 - Hypothetical protein 3e+0 At5g27690 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.54 71.9 Os03g0772800 At3g49870 - Cytochrome c oxidase, subunit VIa family protein 1e-3 At4g37830 cytochrome c oxidase-related O.I. H.G. S.X.
0.51 68.7 Os02g0586400 At3g49870 - Small GTP binding protein Rab2 7e-87 At4g17170 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) O.I. H.G. S.X.
0.44 58.1 Os08g0112800 At3g49870 - Conserved hypothetical protein 2e-3 At1g08480 unknown protein O.I. H.G. S.X.
0.41 52.4 Os06g0568200 At3g49870 - Vacuolar ATPase B subunit 4e-111 At1g20260 hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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