Co-expression analysis

Gene ID PtpAffx.38755.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=7e-21)
Module size 6 genes
NF 0.37
%ile 63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.96PtpAffx.38755.1.A1_atCV260007hypothetical protein-7e-21At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.6187.00.96PtpAffx.249.158.S1_a_atCV234195hypothetical protein-9e-23At4g20150unknown proteinO.I.H.G.S.X.
0.4067.00.96Ptp.2022.1.S1_s_atCV258781hypothetical protein-9e-6At5g14240-O.I.H.G.S.X.
0.3255.20.96PtpAffx.59972.2.S1_a_atCX169696hypothetical protein-2e-9At1g48160signal recognition particle 19 kDa protein, putative / SRP19, putativeO.I.H.G.S.X.
0.2340.50.96PtpAffx.88808.1.A1_atCV251825--5e+0At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.2238.30.96PtpAffx.146199.1.A1_s_atCV272864hypothetical protein-2e-1At2g16860GCIP-interacting family proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.696.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0200800, orthologous to the query gene, PtpAffx.38755.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7591.9Os03g0200800At3g49870--5e-35At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.8896.8Os11g0127700At3g49870-Hypothetical protein2e-1At1g49480RTV1 (related to vernalization1 1)O.I.H.G.S.X.
0.7993.6Os05g0593100At3g49870-Vacuolar ATP synthase subunit C (EC C subunit) (Vacuolar proton pump C subunit)2e-10At1g12840DET3 (DE-ETIOLATED 3)O.I.H.G.S.X.
0.7993.6Os05g0106100At3g49870-Vacuolar ATP synthase 16 kDa proteolipid subunit(EC
0.7491.4Os11g0169900At3g49870-Vacuolar ATP synthase 16 kDa proteolipid subunit(EC (V- ATPase 16 kDa proteolipid subunit)(Fragment)4e-63At1g75630AVA-P4O.I.H.G.S.X.
0.6583.8Os10g0184300At3g49870-Hypothetical protein1e-28At4g39080VHA-A3 (VACUOLAR PROTON ATPASE A3)O.I.H.G.S.X.
0.6483.4Os04g0660600At3g49870-ATP synthase subunit H family protein3e-10At5g55290ATP synthase subunit H family proteinO.I.H.G.S.X.
0.6483.4Os06g0662000At3g49870-Vacuolar ATP synthase catalytic subunit A (EC3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pumpalpha subunit) (V-ATPase 69 kDa subunit)0At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.5877.0Os12g0168900At3g49870--4e-51At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)O.I.H.G.S.X.
0.5877.0Os01g0610100At3g49870-Vacuolar ATP synthase 21 kDa proteolipid subunit(EC (23-kDa subunit of V-ATPase)4e-23At2g25610H+-transporting two-sector ATPase, C subunit family proteinO.I.H.G.S.X.
0.5777.0Os06g0115100At3g49870--4e+0At5g66005Expressed proteinO.I.H.G.S.X.
0.5471.9Os12g0123900At3g49870-Hypothetical protein3e+0At5g27690heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.5471.9Os03g0772800At3g49870-Cytochrome c oxidase, subunit VIa family protein1e-3At4g37830cytochrome c oxidase-relatedO.I.H.G.S.X.
0.5168.7Os02g0586400At3g49870-Small GTP binding protein Rab27e-87At4g17170RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)O.I.H.G.S.X.
0.4458.1Os08g0112800At3g49870-Conserved hypothetical protein2e-3At1g08480unknown proteinO.I.H.G.S.X.
0.4152.4Os06g0568200At3g49870-Vacuolar ATPase B subunit4e-111At1g20260hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanismO.I.H.G.S.X.

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