Co-expression analysis

Gene ID	PtpAffx.38755.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=7e-21)
Module size	6 genes
NF	0.37
%ile	63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.96	PtpAffx.38755.1.A1_at	CV260007	hypothetical protein	-	7e-21	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	PtpAffx.249.158.S1_a_at	CV234195	hypothetical protein	-	9e-23	At4g20150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.2022.1.S1_s_at	CV258781	hypothetical protein	-	9e-6	At5g14240	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.59972.2.S1_a_at	CX169696	hypothetical protein	-	2e-9	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.88808.1.A1_at	CV251825	-	-	5e+0	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.96	PtpAffx.146199.1.A1_s_at	CV272864	hypothetical protein	-	2e-1	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.6	96.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, Contig9224_at, orthologous to the query gene, PtpAffx.38755.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	94.5	Contig9224_at	At3g49870	-	-	1e-38	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig9223_at	At3g49870	-	-	2e+0	At4g13450	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	HVSMEl0003K07r2_at	At3g49870	-	-	3e-1	At1g03106	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig16601_at	At3g49870	-	-	3e+0	At2g40070	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig6326_at	At3g49870	-	-	6e-7	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig15807_at	At3g49870	-	-	2e-9	At1g79610	sodium proton exchanger, putative (NHX6)	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig8707_s_at	At3g49870	-	-	6e-4	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig8028_at	At3g49870	-	-	7e-14	At4g21470	ATFMN/FHY (riboflavin kinase/FMN hydrolase)	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig11890_at	At3g49870	-	-	4e-5	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	Contig16227_at	At3g49870	-	-	4e-1	At4g29770	-	O.I.	H.G.	S.X.	Please select
0.05	4.1	baak34e14_at	At3g49870	-	-	3e+0	At2g32340	-	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig13829_at	At3g49870	-	-	3e-1	At5g37640	UBQ9	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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