Co-expression analysis

Gene ID	PtpAffx.38755.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=7e-21)
Module size	6 genes
NF	0.37
%ile	63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.96	PtpAffx.38755.1.A1_at	CV260007	hypothetical protein	-	7e-21	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	PtpAffx.249.158.S1_a_at	CV234195	hypothetical protein	-	9e-23	At4g20150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.2022.1.S1_s_at	CV258781	hypothetical protein	-	9e-6	At5g14240	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.59972.2.S1_a_at	CX169696	hypothetical protein	-	2e-9	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.88808.1.A1_at	CV251825	-	-	5e+0	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.96	PtpAffx.146199.1.A1_s_at	CV272864	hypothetical protein	-	2e-1	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.6	96.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.92317.1.S1_at, orthologous to the query gene, PtpAffx.38755.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	GmaAffx.92317.1.S1_at	At3g49870	-	-	2e-54	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.16130.1.S1_at	At3g49870	-	-	5e-4	At1g63500	ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.2528.1.S1_at	At3g49870	-	-	2e-7	At3g26780	catalytic	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.8354.1.S1_at	At3g49870	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.33280.1.S1_at	At3g49870	-	-	2e-8	At5g22875	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	Gma.3012.1.A1_at	At3g49870	-	-	2e-6	At2g13690	PRLI-interacting factor, putative	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.6745.1.S1_at	At3g49870	-	-	8e+0	At5g37570	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.5103.1.S1_at	At3g49870	-	-	2e-59	At1g80500	-	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.89701.1.A1_s_at	At3g49870	-	-	7e-11	At1g15370	-	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.1863.1.S1_at	At3g49870	-	-	4e-11	At5g37510	EMB1467 (embryo defective 1467)	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.48531.1.S1_at	At3g49870	-	-	3e-13	At1g54390	PHD finger protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.13032.1.S1_at	At3g49870	-	-	1e-3	At4g26710	ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.12534.1.A1_at	At3g49870	-	-	1e-1	At3g53200	AtMYB27 (myb domain protein 27)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.1434.1.S1_at	At3g49870	-	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.86632.1.S1_at	At3g49870	-	-	9e-2	At5g53045	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.87332.1.S1_s_at	At3g49870	-	-	5e-35	At1g09330	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.5712.1.S1_at	At3g49870	-	-	2e+0	At3g12260	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.17869.1.S1_at	At3g49870	-	-	1e+0	At1g61250	SC3 (SECRETORY CARRIER 3)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.3660.1.S1_at	At3g49870	-	-	1e-20	At1g25520	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.3652.1.S1_a_at	At3g49870	-	-	4e-10	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.9858.1.S1_at	At3g49870	-	-	2e-13	At3g55005	TON1B (tonneau 1b)	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.5762.1.S1_at	At3g49870	aminoalcoholphosphotransferase	-	2e-47	At1g13560	AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.9587.1.A1_at	At3g49870	-	-	6e+0	At5g47060	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.1623.1.S1_at	At3g49870	-	-	3e-50	At2g20580	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.51048.1.S1_s_at	At3g49870	-	-	6e-5	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.3441.1.S1_at	At3g49870	-	-	4e-1	At1g14205	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.92496.1.S1_s_at	At3g49870	-	-	1e-75	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.1846.1.S1_at	At3g49870	-	-	1e-63	At1g61150	-	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.4037.1.S1_at	At3g49870	-	-	2e-177	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.10247.1.S1_at	At3g49870	-	-	6e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.39534.1.S1_at	At3g49870	-	-	2e-9	At3g08980	signal peptidase I family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.2731.5.S1_s_at	At3g49870	-	-	3e-17	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.8354.1.S1_s_at	At3g49870	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.13295.1.S1_at	At3g49870	-	-	9e-46	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.16985.1.S1_at	At3g49870	-	-	1e-9	At2g47700	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.6495.1.S1_at	At3g49870	-	-	5e-51	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.8460.1.S1_at	At3g49870	acyl-CoA oxidase	-	7e-39	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.13346.1.S1_at	At3g49870	-	-	6e-12	At1g61780	postsynaptic protein-related	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.4335.1.S1_at	At3g49870	-	-	8e-3	At2g17190	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.8562.1.S1_at	At3g49870	-	-	2e-22	At1g02100	leucine carboxyl methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	Gma.1837.1.S1_at	At3g49870	-	-	7e-9	At1g71900	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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