Co-expression analysis

Gene ID PtpAffx.38755.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=7e-21)
Module size 6 genes
NF 0.37
%ile 63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.96PtpAffx.38755.1.A1_atCV260007hypothetical protein-7e-21At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.6187.00.96PtpAffx.249.158.S1_a_atCV234195hypothetical protein-9e-23At4g20150unknown proteinO.I.H.G.S.X.
0.4067.00.96Ptp.2022.1.S1_s_atCV258781hypothetical protein-9e-6At5g14240-O.I.H.G.S.X.
0.3255.20.96PtpAffx.59972.2.S1_a_atCX169696hypothetical protein-2e-9At1g48160signal recognition particle 19 kDa protein, putative / SRP19, putativeO.I.H.G.S.X.
0.2340.50.96PtpAffx.88808.1.A1_atCV251825--5e+0At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.2238.30.96PtpAffx.146199.1.A1_s_atCV272864hypothetical protein-2e-1At2g16860GCIP-interacting family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.696.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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