Co-expression analysis

Gene ID	PtpAffx.37937.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g44590: 60S acidic ribosomal protein P2 (RPP2D) (HF=3e+0)
Module size	6 genes
NF	0.25
%ile	45.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.87	PtpAffx.37937.1.A1_at	CV232965	-	-	3e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.87	PtpAffx.217408.1.S1_at	pmrna32658	-	-	8e-5	At1g12920	ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.87	PtpAffx.93264.1.A1_at	DN492222	hypothetical protein	-	9e-3	At5g39540	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.88	PtpAffx.200420.1.S1_at	pmrna845	hypothetical protein	-	6e-2	At5g61930	APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.87	PtpAffx.210007.1.S1_at	pmrna19736	-	-	5e+0	At5g41910	RNA polymerase II mediator complex protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.87	PtpAffx.213415.1.S1_at	pmrna26240	hypothetical protein	-	4e+0	At2g17870	cold-shock DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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