Co-expression analysis

Gene ID	PtpAffx.37459.3.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g30590: WRKY21 (HF=8e-2)
Module size	7 genes
NF	0.15
%ile	28.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	0.94	PtpAffx.37459.3.S1_at	CV242690	hypothetical protein	-	8e-2	At2g30590	WRKY21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.46113.1.S1_at	CF936546	hypothetical protein	-	1e+0	At2g31150	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.94	Ptp.3368.1.S1_at	CX656527	hypothetical protein	-	1e-32	At5g52240	MSBP1 (membrane steroid binding protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.95	Ptp.3030.1.S1_s_at	DN484799	hypothetical protein	-	6e-15	At1g79440	ALDH5F1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.95	Ptp.1631.1.S1_at	CK092403	f-box family protein /// f-box family protein	-	5e-6	At4g07400	VFB3 (VIER F-BOX PROTEINE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.95	Ptp.8135.1.A1_at	CV237848	hypothetical protein	-	6e+0	At4g21040	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.95	PtpAffx.22453.1.S1_at	DN491360	hypothetical protein	-	6e-72	At5g14530	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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