Co-expression analysis

Gene ID	PtpAffx.37380.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g45860: unknown protein (HF=2e-2)
Module size	18 genes
NF	0.26
%ile	46.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.93	PtpAffx.37380.1.S1_at	CV254562	hypothetical protein	-	2e-2	At2g45860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	PtpAffx.89256.1.A1_at	CV231724	hypothetical protein	-	2e-5	At2g26060	emb1345 (embryo defective 1345)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.93	PtpAffx.157059.1.S1_s_at	CV261941	hypothetical protein	-	8e-8	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.96	PtpAffx.88348.1.A1_at	CV270981	-	-	2e-1	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	PtpAffx.77911.1.A1_at	CV245687	hypothetical protein	-	8e+0	At4g33410	signal peptide peptidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	Ptp.19.1.S1_at	CK092960	hypothetical protein	-	2e-77	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.96	PtpAffx.75085.1.S1_at	CX169793	hypothetical protein	-	1e+0	At3g57450	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	PtpAffx.66552.1.S1_at	BU876123	hypothetical protein	-	1e-6	At1g30480	DRT111	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.675.1.S1_x_at	CV265162	hypothetical protein	-	2e-77	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.69075.1.A1_s_at	CV279959	hypothetical protein	-	1e+0	At2g41390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.19719.1.A1_at	CV255300	-	-	3e-52	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.96	Ptp.5077.1.S1_x_at	AF121195.2	hypothetical protein	-	2e-25	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.96	Ptp.5077.1.S1_at	AF121195.2	-	-	2e-25	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.96	Ptp.7209.1.S1_s_at	CV261003	hypothetical protein	-	2e-16	At1g65650	UCH2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.97	Ptp.754.1.S1_at	CA927725	hypothetical protein	-	2e-56	At1g26550	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.96	PtpAffx.8891.2.A1_s_at	CV248841	hypothetical protein	-	9e-11	At1g72370	P40	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.96	PtpAffx.32590.1.S1_at	CV281093	hypothetical protein	-	1e-29	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.94	PtpAffx.2885.1.S1_at	CV271712	hypothetical protein	-	9e-49	At5g10780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	93.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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