Co-expression analysis

Gene ID PtpAffx.3736.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g63140: ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29) (HF=2e-4)
Module size 6 genes
NF 0.47
%ile 77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.94PtpAffx.3736.1.S1_atCV250453hypothetical protein-2e-4At5g63140ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29)O.I.H.G.S.X.
0.5078.60.94PtpAffx.223181.1.S1_atpmrna41055hypothetical protein-4e-32At1g26810GALT1 (GALACTOSYLTRANSFERASE1)O.I.H.G.S.X.
0.4369.70.94PtpAffx.3505.1.A1_atBP935453hypothetical protein-1e-10At3g52190PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1)O.I.H.G.S.X.
0.4067.00.94PtpAffx.3678.1.A1_atBP934230hypothetical protein-1e-9At3g25070RIN4 (RPM1 INTERACTING PROTEIN 4)O.I.H.G.S.X.
0.2950.50.95PtpAffx.37313.1.A1_atCV256677hypothetical protein-5e-47At3g26020serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeO.I.H.G.S.X.
0.2340.50.94PtpAffx.18276.1.A1_a_atCV254703hypothetical protein-2e-59At3g15260protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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