Co-expression analysis

Gene ID	PtpAffx.3718.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g63620: oxidoreductase, zinc-binding dehydrogenase family protein (HF=6e-31)
Module size	6 genes
NF	0.38
%ile	64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.94	PtpAffx.3718.1.A1_at	CX167706	hypothetical protein	-	6e-31	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.94	PtpAffx.24127.2.A1_a_at	CV274197	hypothetical protein	-	6e-6	At3g51000	epoxide hydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.95	PtpAffx.158416.1.S1_at	CV131381	hypothetical protein	-	9e-24	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	PtpAffx.24127.1.S1_at	CV256258	hypothetical protein	-	6e-4	At3g51000	epoxide hydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.18489.1.A1_s_at	CV245016	hypothetical protein	-	5e-3	At1g49050	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.95	PtpAffx.22348.1.S1_at	AI165753	-	-	1e-22	At5g48380	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.3	96.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1	96.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage