Co-expression analysis

Gene ID	PtpAffx.36849.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g13060: - (HF=8e-22)
Module size	6 genes
NF	0.37
%ile	63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.96	PtpAffx.36849.1.S1_at	BU872031	hypothetical protein	-	8e-22	At3g13060	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.18719.3.A1_s_at	CK093553	-	-	2e-17	At4g23570	SGT1A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.63920.1.S1_at	CX182780	hypothetical protein	-	1e+0	At1g68905	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	Ptp.2052.1.S1_s_at	CV264089	hypothetical protein	-	7e-13	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.32590.2.A1_s_at	CA931381	hypothetical protein	-	1e-24	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	PtpAffx.52999.1.S1_at	DN502552	-	-	3e-2	At4g29290	LCR26 (Low-molecular-weight cysteine-rich 26)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	92.1	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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