Co-expression analysis

Gene ID PtpAffx.36847.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g02065: SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) (HF=3e+0)
Module size 25 genes
NF 0.01
%ile 2.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.80.70PtpAffx.36847.1.A1_atCV276303--3e+0At1g02065SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)O.I.H.G.S.X.
0.1525.30.82PtpAffx.223492.1.S1_atpmrna41523hypothetical protein-6e-1At2g27810xanthine/uracil permease family proteinO.I.H.G.S.X.
0.1423.50.93Ptp.5778.1.S1_s_atBU888688hypothetical protein-4e-59At3g17820ATGSKB6O.I.H.G.S.X.
0.1118.10.87PtpAffx.77850.1.A1_atCV257351--4e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.0812.90.76PtpAffx.211311.1.S1_atpmrna22178hypothetical protein-2e-1At4g13870WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE)O.I.H.G.S.X.
0.0812.90.81PtpAffx.207644.1.S1_atpmrna15164hypothetical protein-7e-4At2g35770scpl28 (serine carboxypeptidase-like 28)O.I.H.G.S.X.
0.0711.60.94PtpAffx.163838.2.S1_a_atBU879285hypothetical protein-1e-34At2g01140fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.069.80.83Ptp.3906.1.S1_atDN498709hypothetical protein-8e-1At3g25882NIMIN-2 (NIM1-INTERACTING 2)O.I.H.G.S.X.
0.069.80.93PtpAffx.5844.1.S1_atCX174548hypothetical protein-9e-5At1g68680unknown proteinO.I.H.G.S.X.
0.058.30.87PtpAffx.80051.1.S1_atCK114587--3e+0At4g36510unknown proteinO.I.H.G.S.X.
0.046.90.83PtpAffx.221115.1.S1_atpmrna37717hypothetical protein-2e-1At2g45530zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.035.20.84PtpAffx.207781.1.S1_atpmrna15471hypothetical protein-8e-33At2g30130ASL5O.I.H.G.S.X.
0.035.20.86PtpAffx.221052.1.S1_atpmrna37610hypothetical protein-3e-5At2g44990CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7)O.I.H.G.S.X.
0.035.20.89Ptp.4604.1.S1_s_atAI162560hypothetical protein-3e-63At3g46060ATRAB8AO.I.H.G.S.X.
0.035.20.86Ptp.7310.1.S1_atDN492822--5e-2At1g01305unknown proteinO.I.H.G.S.X.
0.023.60.80Ptp.2455.1.S1_atCK092820hypothetical protein-1e+0At3g06110MKP2 (MAPK PHOSPHATASE 2)O.I.H.G.S.X.
0.023.60.90PtpAffx.214455.1.S1_s_atpmrna28104hypothetical protein-2e+0At1g07930elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.023.60.82PtpAffx.1501.3.S1_atDN488380--2e+0At4g33110coclaurine N-methyltransferase, putativeO.I.H.G.S.X.
0.012.20.83PtpAffx.205450.1.S1_atpmrna10778hypothetical protein-1e+0At3g62840-O.I.H.G.S.X.
0.012.20.82PtpAffx.211107.1.S1_x_atpmrna21820hypothetical protein-2e+0At2g31620receptor-like protein kinase-relatedO.I.H.G.S.X.
0.012.20.86PtpAffx.211267.1.S1_x_atpmrna22105hypothetical protein-2e-25At1g22620ATSAC1 (suppressor of actin 1)O.I.H.G.S.X.
0.012.20.89PtpAffx.25080.1.A1_s_atCV234263hypothetical protein-8e-2At2g03937-O.I.H.G.S.X.
0.012.20.88PtpAffx.144328.2.S1_s_atCK101570hypothetical protein-3e-2At3g15050IQD10 (IQ-domain 10)O.I.H.G.S.X.
-0.40.86Ptp.2141.1.A1_s_atCV239739hypothetical protein-5e-16At5g57020NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE)O.I.H.G.S.X.
-0.40.85PtpAffx.203755.1.S1_atpmrna7423hypothetical protein-2e-44At4g21530nucleotide bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.594.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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