Co-expression analysis

Gene ID	PtpAffx.3647.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g26680: - (HF=9e-5)
Module size	8 genes
NF	0.30
%ile	52.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.94	PtpAffx.3647.1.A1_at	CV230293	hypothetical protein	-	9e-5	At2g26680	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	Ptp.2955.1.A1_at	DN489174	hypothetical protein	-	5e-19	At5g13610	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	PtpAffx.218536.1.S1_s_at	pmrna34192	hypothetical protein	-	7e-1	At2g19700	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.95	PtpAffx.2405.1.S1_at	CK090525	hypothetical protein	-	2e-17	At5g42370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.128057.1.A1_at	CV232767	hypothetical protein	-	3e-26	At4g33410	signal peptide peptidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.94	PtpAffx.216142.1.S1_at	pmrna30747	enhancer of polycomb-like protein	-	7e-29	At1g16690	transcription factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	Ptp.4121.1.S1_s_at	BP934370	glutathione-dependent formaldehyde dehydrogenase	-	1e-44	At5g43940	HOT5 (sensitive to hot temperatures 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	PtpAffx.145088.1.A1_at	DN488679	hypothetical protein	-	1e+0	At3g50900	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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