Co-expression analysis

Gene ID PtpAffx.3645.1.S1_at
Gene name catalase
Homology with ArabidopsisSimilar to At4g35090: CAT2 (CATALASE 2) (HF=0)
Module size 6 genes
NF 0.48
%ile 78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.92PtpAffx.3645.1.S1_atBP934882catalase-0At4g35090CAT2 (CATALASE 2)O.I.H.G.S.X.
0.6086.00.93PtpAffx.209405.1.S1_atpmrna18629hypothetical protein-8e-48At2g28320pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinO.I.H.G.S.X.
0.4067.00.92PtpAffx.9911.1.S1_atCN523707hypothetical protein-1e-5At3g16270-O.I.H.G.S.X.
0.4067.00.93PtpAffx.207437.1.S1_atpmrna14768hypothetical protein-3e-9At5g65890ACR1 (ACT Domain Repeat 1)O.I.H.G.S.X.
0.3357.50.92PtpAffx.5514.7.A1_a_atCV245932hypothetical protein-1e+0At1g21323unknown proteinO.I.H.G.S.X.
0.2950.50.92PtpAffx.204681.1.S1_atpmrna9216hypothetical protein-4e-106At4g34100protein binding / zinc ion bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.092.9GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372045Clone1979_LPI5_N+_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage