Co-expression analysis

Gene ID	PtpAffx.35909.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g55970: oxidoreductase, 2OG-Fe(II) oxygenase family protein (HF=3e-2)
Module size	11 genes
NF	0.47
%ile	76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.92	PtpAffx.35909.1.S1_at	CV244075	hypothetical protein	-	3e-2	At3g55970	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.92	PtpAffx.132883.1.S1_at	BI072375	hypothetical protein	-	2e-1	At4g10430	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.92	PtpAffx.218771.1.S1_s_at	pmrna34498	jumonji domain protein /// hypothetical protein	-	5e-26	At1g30810	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.92	PtpAffx.207242.1.S1_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.94	PtpAffx.28701.2.S1_s_at	BU867887	hypothetical protein	-	1e-13	At5g01520	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.153772.1.S1_at	CX169838	hypothetical protein	-	1e-88	At2g21470	SAE2 (SUMO-ACTIVATING ENZYME 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.219775.1.S1_x_at	pmrna35842	hypothetical protein	-	5e-1	At5g03380	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.93	Ptp.7478.1.S1_at	BU866961	hypothetical protein	-	2e-3	At5g02220	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	PtpAffx.17054.1.A1_at	CV268637	-	-	2e-2	At5g19151	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.92	PtpAffx.4533.1.S1_at	CV242797	hypothetical protein	-	7e-2	At1g35181	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	PtpAffx.84646.1.S1_at	DN483684	hypothetical protein	-	2e+0	At4g32208	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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