CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.35798.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g01920: STN8 (HF=9e-10)

Module size 12 genes

NF 0.43

%ile 71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 86.0 0.95 PtpAffx.35798.1.A1_at BP930286 hypothetical protein - 9e-10 At5g01920 STN8 O.I. H.G. S.X.
0.69 91.5 0.96 PtpAffx.35526.1.S1_at CV282384 hypothetical protein - 3e-55 At4g30950 FAD6 (FATTY ACID DESATURASE 6) O.I. H.G. S.X.
0.50 78.6 0.97 PtpAffx.23723.2.S1_a_at CV227874 hypothetical protein - 3e-6 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) O.I. H.G. S.X.
0.43 69.7 0.96 PtpAffx.1377.1.A1_at CV227994 - - 7e+0 At5g60615 - O.I. H.G. S.X.
0.42 68.6 0.98 PtpAffx.49635.1.S1_at CX182101 - - 7e-27 At1g75350 emb2184 (embryo defective 2184) O.I. H.G. S.X.
0.42 68.6 0.97 PtpAffx.51219.1.S1_at CN519044 hypothetical protein - 3e-14 At1g26220 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.38 63.7 0.96 PtpAffx.70618.1.S1_at CV281522 hypothetical protein - 7e-3 At2g46820 PSI-P (PHOTOSYSTEM I P SUBUNIT) O.I. H.G. S.X.
0.37 62.3 0.97 PtpAffx.10210.1.S1_at AJ768849 hypothetical protein - 1e-86 At4g20360 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) O.I. H.G. S.X.
0.35 59.7 0.97 PtpAffx.249.322.S1_a_at CX658313 hypothetical protein - 1e-101 At5g35630 GS2 (GLUTAMINE SYNTHETASE 2) O.I. H.G. S.X.
0.33 57.5 0.96 Ptp.6627.1.S1_at CV245106 hypothetical protein - 4e-17 At5g54600 50S ribosomal protein L24, chloroplast (CL24) O.I. H.G. S.X.
0.33 57.5 0.97 PtpAffx.161392.1.S1_s_at AJ773143 - - 1e-40 At2g33450 50S ribosomal protein L28, chloroplast (CL28) O.I. H.G. S.X.
0.31 53.7 0.97 PtpAffx.53128.1.S1_at CV238625 - - 7e-25 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.0 98.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1 93.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
1.5 83.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.4 82.3 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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