Co-expression analysis

Gene ID PtpAffx.3546.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g10730: binding / catalytic/ coenzyme binding (HF=3e-33)
Module size 6 genes
NF 0.53
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.95PtpAffx.3546.1.A1_atCV241865hypothetical protein-3e-33At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.6791.10.96Ptp.2292.1.A1_atCV232695hypothetical protein-4e-125At4g35950ARAC6 (ARABIDOPSIS RAC-LIKE 6)O.I.H.G.S.X.
0.6086.00.96PtpAffx.14532.1.A1_atCK090232hypothetical protein-3e-2At5g64020unknown proteinO.I.H.G.S.X.
0.4673.70.96Ptp.5157.1.S1_a_atCF230150hypothetical protein-1e-13At4g17720RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3559.70.95PtpAffx.121639.1.A1_s_atCK087677hypothetical protein-4e+0At1g65484unknown proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.108502.1.A1_x_atBI127008hypothetical protein-8e-30At3g48030hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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