Co-expression analysis

Gene ID	PtpAffx.35380.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to Atmg00900: - (HF=1e+0)
Module size	8 genes
NF	0.36
%ile	63.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	0.95	PtpAffx.35380.1.S1_a_at	CV256335	hypothetical protein	-	1e+0	Atmg00900	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	PtpAffx.17949.1.A1_a_at	CV230098	hypothetical protein	-	3e-17	At5g13190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.34171.2.S1_a_at	DN494098	-	-	4e+0	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.68429.1.S1_at	DN493879	hypothetical protein	-	1e-8	At3g58710	WRKY69	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	Ptp.5801.2.S1_a_at	BU836809	hypothetical protein	-	2e+0	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.12733.1.S1_at	CK102307	hypothetical protein	-	4e+0	At4g33465	SCRL22 (SCR-Like 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	PtpAffx.61027.1.S1_at	CV273874	hypothetical protein	-	1e-17	At2g26230	uricase / urate oxidase / nodulin 35, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage