Co-expression analysis

Gene ID PtpAffx.35277.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g04280: ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) (HF=3e+0)
Module size 6 genes
NF 0.33
%ile 58.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.81PtpAffx.35277.1.S1_atBU874449--3e+0At3g04280ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)O.I.H.G.S.X.
0.5078.60.85PtpAffx.203985.1.S1_atpmrna7862hypothetical protein-3e+0At5g64040PSANO.I.H.G.S.X.
0.2950.50.82PtpAffx.115274.1.A1_atCV225684--1e+1At4g11880AGL14 (agamous-like 14)O.I.H.G.S.X.
0.2950.50.83PtpAffx.13421.1.S1_atBU823258--2e+0At3g15870oxidoreductaseO.I.H.G.S.X.
0.2543.60.81PtpAffx.212609.1.S1_x_atpmrna24688hypothetical protein-3e+0At5g56990-O.I.H.G.S.X.
0.1525.30.82PtpAffx.216698.1.S1_atpmrna31647hypothetical protein-4e+0At4g21860MSRB2 (methionine sulfoxide reductase B 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.095.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.494.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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