Co-expression analysis

Gene ID	PtpAffx.35209.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g18870: mitochondrial transcription termination factor-related / mTERF-related (HF=8e+0)
Module size	22 genes
NF	0.19
%ile	35.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.7	0.86	PtpAffx.35209.1.S1_at	BU810187	-	-	8e+0	At3g18870	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.96	Ptp.2954.1.S1_s_at	CK109808	hypothetical protein	-	3e-45	Atcg00070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.89	PtpAffx.19651.1.A1_at	CV228600	hypothetical protein	-	1e+0	At1g24735	O-methyltransferase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	PtpAffx.162388.1.S1_at	CX186725	-	-	2e-48	Atcg00300	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.93	PtpAffx.114309.1.A1_s_at	CV272168	hypothetical protein	-	2e-4	At2g39140	SVR1 (SUPPRESSOR OF VARIEGATION 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.97	PtpAffx.653.4.S1_a_at	CV244767	-	-	2e+0	At1g21870	glucose-6-phosphate/phosphate translocator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.97	PtpAffx.216969.1.S1_s_at	pmrna32052	hypothetical protein	-	4e-39	Atcg00280	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.98	PtpAffx.225549.1.S1_s_at	pmrna44977	hypothetical protein	-	0	Atcg00280	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.97	Ptp.7514.1.S1_at	CK109314	hypothetical protein	-	9e-152	Atcg00520	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.93	PtpAffx.3103.1.A1_s_at	BU885954	hypothetical protein	-	1e+0	At1g63940	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.98	Ptp.7348.1.S1_s_at	CV280185	-	-	0	Atcg01110	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.96	PtpAffx.113964.2.A1_a_at	CV277067	hypothetical protein	-	3e-5	At1g30210	TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.97	Ptp.71.1.A1_a_at	BU895950	-	-	3e-64	At5g59250	sugar transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	PtpAffx.10751.1.A1_a_at	CV236751	precursor of carboxylase t-protein 1, glycine decarboxylase complex	-	7e-63	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.92	PtpAffx.53466.1.S1_at	DN487053	-	-	8e-2	At4g25170	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.96	PtpAffx.201757.1.S1_at	pmrna3505	hypothetical protein	-	1e+0	At1g08270	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.96	PtpAffx.19843.1.S1_at	DN491083	-	-	1e-34	Atcg01050	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.92	PtpAffx.209175.1.S1_at	pmrna18163	integral membrane single C2 domain protein	-	1e-83	At1g50260	NTMC2T5.1 (N-TERMINAL-TRANSMEMBRANE-C2 DOMAIN TYPE 5.1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.92	PtpAffx.1968.1.S1_at	CV269129	hypothetical protein	-	2e-15	At2g35795	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.93	Ptp.7843.1.S1_s_at	BU835612	hypothetical protein	-	4e+0	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.93	PtpAffx.5602.2.S1_a_at	CV267899	hypothetical protein	-	1e-14	At2g26930	ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.96	Ptp.6048.1.S1_at	DN484034	hypothetical protein	-	7e-3	At1g73885	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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