Co-expression analysis

Gene ID PtpAffx.3494.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g25510: unknown protein (HF=4e-1)
Module size 8 genes
NF 0.24
%ile 43.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6187.00.85PtpAffx.3494.1.S1_atDN498279--4e-1At4g25510unknown proteinO.I.H.G.S.X.
0.4067.00.90PtpAffx.205912.1.S1_atpmrna11725hypothetical protein-2e-2At4g00330CRCK2O.I.H.G.S.X.
0.3661.60.89PtpAffx.123534.1.S1_s_atCV240522GRAS family transcription factor-4e-1At5g41920scarecrow transcription factor family proteinO.I.H.G.S.X.
0.3153.70.92PtpAffx.35765.1.A1_atBP931605hypothetical protein-7e-1At2g32350-O.I.H.G.S.X.
0.1729.10.88Ptp.2645.1.S1_s_atCV266931hypothetical protein-6e-5At5g13080WRKY75O.I.H.G.S.X.
0.1626.90.89PtpAffx.204955.1.S1_atpmrna9801hypothetical protein-5e-4At3g46620zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1525.30.89PtpAffx.202451.1.S1_atpmrna4907cc-nbs-lrr resistance protein-1e+0At2g18540cupin family proteinO.I.H.G.S.X.
0.1321.60.86PtpAffx.225076.1.S1_atpmrna44165hypothetical protein-1e-1At2g17530protein kinase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.095.3GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.389.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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