Co-expression analysis

Gene ID	PtpAffx.3429.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g04700: - (HF=2e+0)
Module size	6 genes
NF	0.23
%ile	42.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.87	PtpAffx.3429.2.S1_at	DN491388	hypothetical protein	-	2e+0	At5g04700	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.87	PtpAffx.204732.1.S1_at	pmrna9318	hypothetical protein	-	3e+0	At3g16555	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.88	PtpAffx.114218.1.A1_at	CV266727	hypothetical protein	-	8e-11	At1g02475	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.88	PtpAffx.67687.1.S1_at	DN497463	-	-	5e-2	At2g22040	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.87	PtpAffx.213415.1.S1_at	pmrna26240	hypothetical protein	-	4e+0	At2g17870	cold-shock DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.86	PtpAffx.18936.1.A1_at	CV228204	-	-	5e-9	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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