Co-expression analysis

Gene ID	PtpAffx.3361.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g11690: ATTIM17-3 (HF=4e+0)
Module size	6 genes
NF	0.04
%ile	9.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.80	PtpAffx.3361.1.S1_at	DN493891	-	-	4e+0	At5g11690	ATTIM17-3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.82	PtpAffx.201798.1.S1_at	pmrna3581	hypothetical protein	-	7e-1	At4g23030	MATE efflux protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.81	PtpAffx.136947.1.S1_at	BU888550	-	-	1e+0	At2g39920	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.81	PtpAffx.215165.1.S1_at	pmrna29205	hypothetical protein	-	5e+0	At5g11120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.82	PtpAffx.220143.1.S1_at	pmrna36493	-	-	1e-1	At1g76520	auxin efflux carrier family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.81	PtpAffx.119162.1.A1_at	DN490244	-	-	1e+0	At2g26660	SPX2 (SPX DOMAIN GENE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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