Co-expression analysis

Gene ID	PtpAffx.32368.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g33430: DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) (HF=7e-40)
Module size	9 genes
NF	0.49
%ile	80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	68.6	0.94	PtpAffx.32368.1.S1_a_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.96	PtpAffx.5406.1.A1_a_at	CV283796	hypothetical protein	-	1e-10	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	Ptp.5867.1.S1_s_at	CV245725	hypothetical protein	-	1e-42	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	PtpAffx.4646.1.S1_a_at	CV283009	hypothetical protein	-	5e-25	At1g33810	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	PtpAffx.224342.1.S1_at	pmrna42806	hypothetical protein	-	2e-17	At3g53700	MEE40 (maternal effect embryo arrest 40)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.95698.1.A1_s_at	CV235344	hypothetical protein	-	2e-8	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	PtpAffx.5366.1.A1_at	CV256714	hypothetical protein	-	1e-59	At1g11750	CLPP6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.211806.1.S1_at	pmrna23151	hypothetical protein	-	2e-37	At2g48120	PAC (PALE CRESS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	Ptp.4121.1.S1_s_at	BP934370	glutathione-dependent formaldehyde dehydrogenase	-	1e-44	At5g43940	HOT5 (sensitive to hot temperatures 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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