Co-expression analysis

Gene ID PtpAffx.32362.1.S1_at
Gene name acyl:coa ligase acetate-coa synthetase-like protein
Homology with ArabidopsisSimilar to At1g68270: AMP-dependent synthetase and ligase family protein (HF=2e-2)
Module size 7 genes
NF 0.48
%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.89PtpAffx.32362.1.S1_atCV242633acyl:coa ligase acetate-coa synthetase-like protein-2e-2At1g68270AMP-dependent synthetase and ligase family proteinO.I.H.G.S.X.
0.5784.20.92PtpAffx.224516.1.S1_s_atpmrna43133hypothetical protein-2e-9At1g22640MYB3 (MYB DOMAIN PROTEIN 3)O.I.H.G.S.X.
0.5078.60.90PtpAffx.735.1.A1_atCV279844--4e-10At1g01250AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4471.90.92PtpAffx.4493.1.A1_x_atCV237113hypothetical protein-6e-1At2g10940protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4067.00.92PtpAffx.119354.1.A1_atBP935809hypothetical protein-1e-4At4g25640MATE efflux family proteinO.I.H.G.S.X.
0.3559.70.92PtpAffx.25004.4.S1_a_atCV237911hypothetical protein-1e-3At5g01870lipid transfer protein, putativeO.I.H.G.S.X.
0.2950.50.93PtpAffx.679.1.S1_s_atCV276694peroxiredoxin-5e-41At3g26060ATPRX QO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.598.6GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.497.0GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.092.9GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.691.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os09g0555800, orthologous to the query gene, PtpAffx.32362.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7189.6Os09g0555800At1g68270-AMP-dependent synthetase and ligase domaincontaining protein2e-1At1g65890AAE12 (ACYL ACTIVATING ENZYME 12)O.I.H.G.S.X.
0.5068.0Os04g0499700At1g68270--6e+0At4g28750PSAE-1 (PSA E1 KNOCKOUT)O.I.H.G.S.X.
0.4660.9Os07g0149700At1g68270--4e+0At5g65650unknown proteinO.I.H.G.S.X.
0.4355.4Os09g0385900At1g68270-Conserved hypothetical protein7e-1At3g09700DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4253.9Os05g0325000At1g68270--8e-2At5g40405-O.I.H.G.S.X.
0.3846.9Os09g0373100At1g68270--7e-2At3g26580-O.I.H.G.S.X.
0.3134.5Os04g0405700At1g68270-Conserved hypothetical protein6e-1At2g37300unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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