Co-expression analysis

Gene ID PtpAffx.3191.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g45920: carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds (HF=4e+0)
Module size 28 genes
NF 0.09
%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.85PtpAffx.3191.1.S1_atBU880287--4e+0At5g45920carboxylesterase/ hydrolase/ hydrolase, acting on ester bondsO.I.H.G.S.X.
0.2645.20.93PtpAffx.200189.1.S1_atpmrna351hypothetical protein-1e-6At1g76280pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2340.50.91PtpAffx.5227.1.A1_s_atCV269200glutaredoxin S15-2e+0At5g39470F-box family proteinO.I.H.G.S.X.
0.2340.50.91PtpAffx.95803.1.S1_atCV232122hypothetical protein-1e-47At4g00660DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.2340.50.89PtpAffx.200186.1.S1_atpmrna345hypothetical protein-1e-1At1g15940bindingO.I.H.G.S.X.
0.2238.30.94Ptp.4336.1.S1_x_atCV256598hypothetical protein-8e-46At2g36130peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeO.I.H.G.S.X.
0.2136.50.92PtpAffx.16450.2.S1_atCV245132hypothetical protein-2e+0At5g65925unknown proteinO.I.H.G.S.X.
0.2034.60.94PtpAffx.205600.1.S1_atpmrna11054hypothetical protein-1e-75At5g42140zinc finger protein, putative / regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.1932.70.93PtpAffx.212370.1.S1_atpmrna24242hypothetical protein-2e-53At1g72040deoxynucleoside kinase familyO.I.H.G.S.X.
0.1729.10.91Ptp.2199.3.S1_atCV274721hypothetical protein-2e+0At2g17660nitrate-responsive NOI protein, putativeO.I.H.G.S.X.
0.1729.10.93PtpAffx.84964.1.A1_atCV273236hypothetical protein-3e-11At5g40660ATP12 protein-relatedO.I.H.G.S.X.
0.1525.30.93PtpAffx.69575.1.A1_atCV253075--5e-12At5g09310unknown proteinO.I.H.G.S.X.
0.1423.50.92PtpAffx.211497.1.S1_atpmrna22531hypothetical protein-2e-23At3g61140FUS6 (FUSCA 6)O.I.H.G.S.X.
0.1423.50.91PtpAffx.206316.1.S1_atpmrna12538hypothetical protein-7e-4At3g55960NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.1321.60.93PtpAffx.225672.1.S1_x_atpmrna45191hypothetical protein-0At2g17930binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptorO.I.H.G.S.X.
0.1321.60.91PtpAffx.5498.1.A1_atCV234927--3e-18At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)O.I.H.G.S.X.
0.1219.60.93PtpAffx.202365.1.S1_atpmrna4747hypothetical protein-2e+0At4g30030aspartyl protease family proteinO.I.H.G.S.X.
0.1219.60.92PtpAffx.38033.1.S1_atCV229082hypothetical protein-2e-28At5g37340zinc finger (ZPR1-type) family proteinO.I.H.G.S.X.
0.1219.60.93PtpAffx.88547.1.A1_atCV262032hypothetical protein-3e-30At1g68720TADA (TRNA ARGININE ADENOSINE DEAMINASE)O.I.H.G.S.X.
0.1118.10.91PtpAffx.111878.1.A1_atCV268273hypothetical protein-2e+0At5g22280unknown proteinO.I.H.G.S.X.
0.1016.30.90PtpAffx.17919.1.S1_atCV273749--5e-79At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.0812.90.93PtpAffx.50813.1.A1_atCV231407--4e-1At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)O.I.H.G.S.X.
0.0812.90.92PtpAffx.213625.1.S1_atpmrna26609hypothetical protein-1e-2At5g01450protein binding / zinc ion bindingO.I.H.G.S.X.
0.0711.60.93PtpAffx.62470.1.A1_atCV254695hypothetical protein-6e-25At4g31200SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinO.I.H.G.S.X.
0.0711.60.92PtpAffx.147246.1.A1_atCV244127--6e-6At3g46630-O.I.H.G.S.X.
0.046.90.90PtpAffx.209293.1.S1_s_atpmrna18366fasciclin-like domain-containing protein-8e-4At3g55820-O.I.H.G.S.X.
0.046.90.89PtpAffx.209578.1.S1_atpmrna18957hypothetical protein-1e-14At1g64570-O.I.H.G.S.X.
0.035.20.90PtpAffx.43868.2.A1_atCV241101silencing group A protein-1e-3At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.594.3GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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