Co-expression analysis

Gene ID	PtpAffx.31782.2.A1_a_at
Gene name	gtp-binding protein SAR1
Homology with Arabidopsis	Similar to At1g09180: ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) (HF=4e-47)
Module size	6 genes
NF	0.46
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.94	PtpAffx.31782.2.A1_a_at	CV272415	gtp-binding protein SAR1	-	4e-47	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.5219.1.A1_s_at	CN523722	hypothetical protein	-	5e-13	At4g29220	PFK1 (PHOSPHOFRUCTOKINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	Ptp.3127.1.S1_s_at	AJ777838	hypothetical protein	-	3e-52	At4g26270	PFK3 (PHOSPHOFRUCTOKINASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.93	PtpAffx.85773.1.S1_at	CK107579	white-brown-complex ABC transporter family	-	6e-17	At1g53390	ATPase, coupled to transmembrane movement of substances	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.93	PtpAffx.132883.1.S1_at	BI072375	hypothetical protein	-	2e-1	At4g10430	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.207242.1.S1_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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