Co-expression analysis

Gene ID	PtpAffx.31307.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to Atcg00800: - (HF=8e+0)
Module size	14 genes
NF	0.18
%ile	33.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.31307.1.A1_s_at	CV240581	hypothetical protein	-	8e+0	Atcg00800	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.92	PtpAffx.207997.1.S1_at	pmrna15871	hypothetical protein	-	3e-1	At2g43280	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.207998.1.S1_at	pmrna15872	hypothetical protein	-	5e-22	At1g25570	leucine-rich repeat protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.7617.1.S1_a_at	CA826002	actin 2	-	2e-79	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.92	PtpAffx.211038.1.S1_s_at	pmrna21685	hypothetical protein	-	3e-20	At5g18410	PIR121	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	PtpAffx.152677.1.S1_at	CX172956	-	-	6e-12	At5g53100	oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.93	PtpAffx.152677.1.S1_s_at	CX172956	hypothetical protein	-	6e-12	At5g53100	oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.92	PtpAffx.201572.1.S1_s_at	pmrna3087	hypothetical protein	-	5e+0	Atcg01090	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	PtpAffx.1025.10.S1_a_at	CX186298	vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine	-	3e-83	At5g17920	ATMS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.92	PtpAffx.157774.1.S1_at	BU834744	hypothetical protein	-	2e-2	At2g18730	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.93	PtpAffx.144008.1.S1_s_at	BU833721	hypothetical protein	-	5e-33	At1g30440	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.92	PtpAffx.211949.1.S1_at	pmrna23461	hypothetical protein	-	1e-1	At3g26744	ICE1 (INDUCER OF CBF EXPRESSION 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.93	PtpAffx.205265.1.S1_at	pmrna10442	hypothetical protein	-	2e-1	At1g16270	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.92	PtpAffx.130675.1.S1_s_at	BU876366	hypothetical protein	-	5e-34	At2g24990	RIO1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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