Co-expression analysis

Gene ID	PtpAffx.30445.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g18040: MPK9 (MAP KINASE 9) (HF=2e-32)
Module size	6 genes
NF	0.39
%ile	66.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.90	PtpAffx.30445.2.S1_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.89	PtpAffx.92745.1.S1_at	CK104111	hypothetical protein	-	4e-22	At1g73670	ATMPK15	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.213932.1.S1_at	pmrna27162	hypothetical protein	-	5e-41	At3g47600	ATMYB94 (MYB DOMAIN PROTEIN 94)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.30445.2.S1_a_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	Ptp.956.1.A1_at	CV238436	-	-	9e-49	At1g17840	WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.90	PtpAffx.219737.1.S1_s_at	pmrna35759	hypothetical protein	-	4e-41	At3g09600	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	91.8	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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