Co-expression analysis

Gene ID PtpAffx.30445.2.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g18040: MPK9 (MAP KINASE 9) (HF=2e-32)
Module size 6 genes
NF 0.47
%ile 77.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.90PtpAffx.30445.2.S1_a_atCV275763hypothetical protein-2e-32At3g18040MPK9 (MAP KINASE 9)O.I.H.G.S.X.
0.5078.60.90PtpAffx.57734.1.S1_atDN486150--3e-1At1g56200emb1303 (embryo defective 1303)O.I.H.G.S.X.
0.5078.60.93PtpAffx.92745.1.S1_atCK104111hypothetical protein-4e-22At1g73670ATMPK15O.I.H.G.S.X.
0.5078.60.95PtpAffx.30445.2.S1_atCV275763hypothetical protein-2e-32At3g18040MPK9 (MAP KINASE 9)O.I.H.G.S.X.
0.4067.00.91Ptp.5017.1.S1_atCV276285hypothetical protein-1e-10At3g18040MPK9 (MAP KINASE 9)O.I.H.G.S.X.
0.2238.30.88PtpAffx.152452.2.A1_a_atCV269086hypothetical protein-4e-1At1g53903-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.594.3GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.193.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.092.9GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.15487.1.S1_at, orthologous to the query gene, PtpAffx.30445.2.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.1Zm.15487.1.S1_atAt3g18040MPK17-1 - putative MAPK-2e-51At3g18040MPK9 (MAP KINASE 9)O.I.H.G.S.X.
0.5065.7Zm.5951.1.A1_atAt3g18040--3e-14At3g50590nucleotide bindingO.I.H.G.S.X.
0.4861.3Zm.1028.1.S1_atAt3g18040hypothetical protein LOC100274540-1e-15At3g21690MATE efflux family proteinO.I.H.G.S.X.
0.3538.9Zm.5077.1.A1_x_atAt3g18040hypothetical protein LOC100217191-5e-2At3g28070nodulin MtN21 family proteinO.I.H.G.S.X.
0.3336.0Zm.13756.1.A1_atAt3g18040--9e-2At5g13340unknown proteinO.I.H.G.S.X.
0.3336.0Zm.8477.1.S1_atAt3g18040VAMP protein SEC22-3e+0At3g12090TET6 (TETRASPANIN6)O.I.H.G.S.X.
0.3233.4Zm.17567.1.A1_atAt3g18040--2e-14At1g45150unknown proteinO.I.H.G.S.X.
0.2115.5Zm.8461.1.A1_atAt3g18040hypothetical protein LOC100192697-7e-10At3g05010transmembrane protein, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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