CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.30445.2.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g18040: MPK9 (MAP KINASE 9) (HF=2e-32)

Module size 6 genes

NF 0.47

%ile 77.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.90 PtpAffx.30445.2.S1_a_at CV275763 hypothetical protein - 2e-32 At3g18040 MPK9 (MAP KINASE 9) O.I. H.G. S.X.
0.50 78.6 0.90 PtpAffx.57734.1.S1_at DN486150 - - 3e-1 At1g56200 emb1303 (embryo defective 1303) O.I. H.G. S.X.
0.50 78.6 0.93 PtpAffx.92745.1.S1_at CK104111 hypothetical protein - 4e-22 At1g73670 ATMPK15 O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.30445.2.S1_at CV275763 hypothetical protein - 2e-32 At3g18040 MPK9 (MAP KINASE 9) O.I. H.G. S.X.
0.40 67.0 0.91 Ptp.5017.1.S1_at CV276285 hypothetical protein - 1e-10 At3g18040 MPK9 (MAP KINASE 9) O.I. H.G. S.X.
0.22 38.3 0.88 PtpAffx.152452.2.A1_a_at CV269086 hypothetical protein - 4e-1 At1g53903 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 94.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5 94.3 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1 93.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1619722_at, orthologous to the query gene, PtpAffx.30445.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.5 1619722_at At3g18040 hypothetical protein LOC100246022 - 7e-26 At5g19010 MPK16 O.I. H.G. S.X.
0.50 72.7 1616752_at At3g18040 hypothetical protein LOC100245055 - 4e+0 At5g59490 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.50 72.7 1609963_at At3g18040 hypothetical protein LOC100245055 - 9e-8 At5g59480 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.31 41.3 1612967_at At3g18040 hypothetical protein LOC100251827 - 5e-23 At1g74750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.25 30.5 1610952_at At3g18040 hypothetical protein LOC100256999 - 4e+0 At3g17680 - O.I. H.G. S.X.
0.15 15.6 1610478_at At3g18040 hypothetical protein LOC100247635 - 1e+0 At4g23885 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage