Co-expression analysis

Gene ID	PtpAffx.30445.2.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g18040: MPK9 (MAP KINASE 9) (HF=2e-32)
Module size	6 genes
NF	0.47
%ile	77.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.90	PtpAffx.30445.2.S1_a_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.57734.1.S1_at	DN486150	-	-	3e-1	At1g56200	emb1303 (embryo defective 1303)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.92745.1.S1_at	CK104111	hypothetical protein	-	4e-22	At1g73670	ATMPK15	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.30445.2.S1_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.91	Ptp.5017.1.S1_at	CV276285	hypothetical protein	-	1e-10	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.88	PtpAffx.152452.2.A1_a_at	CV269086	hypothetical protein	-	4e-1	At1g53903	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5	94.3	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, Contig6092_at, orthologous to the query gene, PtpAffx.30445.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig6092_at	At3g18040	-	-	2e-54	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.51	67.5	Contig20310_at	At3g18040	-	-	3e+0	At5g56370	F-box family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	HY08C12u_at	At3g18040	-	-	3e+0	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	HX03C24u_at	At3g18040	-	-	1e-2	At5g47500	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig18140_at	At3g18040	-	-	6e-1	At5g57310	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig3221_at	At3g18040	-	-	2e-5	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig13053_at	At3g18040	-	-	5e-1	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig2346_at	At3g18040	-	-	2e-2	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig13986_at	At3g18040	-	-	4e-33	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig8366_at	At3g18040	-	-	4e-3	At3g52170	DNA binding	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig26301_at	At3g18040	-	-	1e+0	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig1464_x_at	At3g18040	-	-	4e-1	At3g14180	transcription factor	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig20279_at	At3g18040	-	-	1e-4	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig12845_at	At3g18040	-	-	9e-34	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig20416_at	At3g18040	-	-	2e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.29	35.5	HVSMEc0003P04r2_at	At3g18040	-	-	7e-49	Atmg00520	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	HVSMEa0004I10f2_s_at	At3g18040	-	-	2e-4	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.26	30.4	HX01F12w_at	At3g18040	-	-	5e+0	At5g18920	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig1064_at	At3g18040	-	-	3e+0	At2g27260	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig13591_at	At3g18040	-	-	8e-47	At5g01230	FtsJ-like methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig18909_at	At3g18040	-	-	3e+1	At5g06610	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig12744_at	At3g18040	-	-	1e+0	At3g18540	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig11777_at	At3g18040	-	-	3e+0	At5g41910	RNA polymerase II mediator complex protein-related	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig4779_s_at	At3g18040	-	-	2e-8	At3g53710	AGD6	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig15755_at	At3g18040	-	-	6e-1	At3g52920	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig10717_at	At3g18040	-	-	1e+0	At5g26670	pectinacetylesterase, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig20828_at	At3g18040	-	-	3e-1	At4g15360	CYP705A3	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig11272_at	At3g18040	-	-	8e-2	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig9414_at	At3g18040	-	-	1e+0	At5g08000	E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig17901_at	At3g18040	-	-	6e+0	At4g10300	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig7285_s_at	At3g18040	-	-	2e-4	At5g17670	hydrolase, acting on ester bonds	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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