Co-expression analysis

Gene ID PtpAffx.30445.2.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g18040: MPK9 (MAP KINASE 9) (HF=2e-32)
Module size 6 genes
NF 0.47
%ile 77.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.90PtpAffx.30445.2.S1_a_atCV275763hypothetical protein-2e-32At3g18040MPK9 (MAP KINASE 9)O.I.H.G.S.X.
0.5078.60.90PtpAffx.57734.1.S1_atDN486150--3e-1At1g56200emb1303 (embryo defective 1303)O.I.H.G.S.X.
0.5078.60.93PtpAffx.92745.1.S1_atCK104111hypothetical protein-4e-22At1g73670ATMPK15O.I.H.G.S.X.
0.5078.60.95PtpAffx.30445.2.S1_atCV275763hypothetical protein-2e-32At3g18040MPK9 (MAP KINASE 9)O.I.H.G.S.X.
0.4067.00.91Ptp.5017.1.S1_atCV276285hypothetical protein-1e-10At3g18040MPK9 (MAP KINASE 9)O.I.H.G.S.X.
0.2238.30.88PtpAffx.152452.2.A1_a_atCV269086hypothetical protein-4e-1At1g53903-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.594.3GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.193.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.092.9GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g18040, orthologous to the query gene, PtpAffx.30445.2.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3643.6At3g18040821329MPK9 (MAP KINASE 9)MAP KINASE 9O.I.H.G.S.X.
0.6277.3At2g17800816290ARAC1A member of ROP GTPase family. Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway.O.I.H.G.S.X.
0.6176.7At2g44090819015-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVO.I.H.G.S.X.
0.5873.8At1g49340841357ATPI4K ALPHAEncodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots.O.I.H.G.S.X.
0.5570.6At1g69330843265zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOO.I.H.G.S.X.
0.5469.5At1g15490838119hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFAO.I.H.G.S.X.
0.5065.3At1g34780840382ATAPRL4 (APR-like 4)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.O.I.H.G.S.X.
0.5065.3At1g65430842854zinc finger protein-relatedF:ubiquitin-protein ligase activity;P:unknown;C:intracellular;MOPFVO.I.H.G.S.X.
0.4659.8At1g13900837949calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:chloroplast;PBMOFO.I.H.G.S.X.
0.4457.2At1g27700839663protein bindingF:protein binding;P:Golgi vesicle transport, vesicle-mediated transport;C:nucleus;PMO.I.H.G.S.X.
0.4152.4At5g23670832432LCB2Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.O.I.H.G.S.X.
0.3643.6At5g54310835519AGD5 (ARF-GAP domain 5)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.O.I.H.G.S.X.
0.3541.6At1g55520841999TBP2 (TATA BINDING PROTEIN 2)TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.O.I.H.G.S.X.
0.3541.6At3g18295821358unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.3338.1At4g19110827649protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.H.G.S.X.
0.2930.3At1g71410843482protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage