Co-expression analysis

Gene ID PtpAffx.30435.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g14600: 60S ribosomal protein L18A (RPL18aC) (HF=5e+0)
Module size 22 genes
NF 0.06
%ile 12.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6688.70.85PtpAffx.30435.1.A1_atCV276087--5e+0At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.
0.2238.30.88PtpAffx.208406.1.S1_atpmrna16710hypothetical protein-1e+0At4g02235AGL51O.I.H.G.S.X.
0.1729.10.87PtpAffx.204748.1.S1_atpmrna9344hypothetical protein-2e-1At3g10850GLY2O.I.H.G.S.X.
0.1729.10.88PtpAffx.216665.1.S1_atpmrna31600hypothetical protein-6e+0At5g02280synbindin, putativeO.I.H.G.S.X.
0.1729.10.91PtpAffx.213427.1.S1_atpmrna26255hypothetical protein-2e-38At2g0522040S ribosomal protein S17 (RPS17B)O.I.H.G.S.X.
0.1626.90.89PtpAffx.205991.1.S1_atpmrna11879hypothetical protein-4e-8At1g32583-O.I.H.G.S.X.
0.1321.60.89PtpAffx.32997.1.A1_atCK091660hypothetical protein-3e+0At5g57300UbiE/COQ5 methyltransferase family proteinO.I.H.G.S.X.
0.1219.60.87Ptp.3301.1.S1_atDN485494--2e-3At4g09800RPS18C (S18 RIBOSOMAL PROTEIN)O.I.H.G.S.X.
0.1219.60.89PtpAffx.209926.1.S1_atpmrna19564hypothetical protein-5e-7At1g78680ATGGH2 (gamma-glutamyl hydrolase 2)O.I.H.G.S.X.
0.1219.60.89PtpAffx.114711.1.A1_atCV246923--6e-58At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.1118.10.89PtpAffx.212325.1.S1_s_atpmrna24169--4e-1At4g21560VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)O.I.H.G.S.X.
0.1016.30.90PtpAffx.217755.1.S1_atpmrna33144hypothetical protein-6e+0At2g06530VPS2.1O.I.H.G.S.X.
0.0711.60.89PtpAffx.201569.1.S1_atpmrna3080hypothetical protein-8e-7At1g07380ceramidase family proteinO.I.H.G.S.X.
0.069.80.89PtpAffx.205703.1.S1_s_atpmrna11262hypothetical protein-1e-30At1g03100pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.058.30.89PtpAffx.95149.1.A1_atCV258004hypothetical protein-2e-2At5g27247unknown proteinO.I.H.G.S.X.
0.046.90.88PtpAffx.85909.1.S1_atCK105659hypothetical protein-7e-8At2g42450lipase class 3 family proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.40910.1.S1_atBU830361hypothetical protein-1e+0At2g43560immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.035.20.88PtpAffx.205947.1.S1_atpmrna11800hypothetical protein-2e-18At3g22150pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.035.20.88PtpAffx.214322.1.S1_atpmrna27854hypothetical protein-2e+0At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.035.20.87PtpAffx.210993.1.S1_atpmrna21595hypothetical protein-7e-1At2g01818zinc ion bindingO.I.H.G.S.X.
0.035.20.87PtpAffx.45481.1.S1_s_atCK107626hypothetical protein-2e-2At5g67040unknown proteinO.I.H.G.S.X.
0.023.60.88PtpAffx.61165.2.A1_atCV265039hypothetical protein-4e-12At5g41940RabGAP/TBC domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.594.3GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.494.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.791.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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