Co-expression analysis

Gene ID PtpAffx.30368.2.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g51730: saposin B domain-containing protein (HF=2e-3)
Module size 10 genes
NF 0.31
%ile 54.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6991.50.93PtpAffx.30368.2.S1_s_atCX657356hypothetical protein-2e-3At3g51730saposin B domain-containing proteinO.I.H.G.S.X.
0.6388.10.95PtpAffx.7443.1.S1_a_atCV262037hypothetical protein-2e-5At5g64816unknown proteinO.I.H.G.S.X.
0.5683.90.95PtpAffx.204664.1.S1_s_atpmrna9183hypothetical protein-5e-52At1g49670NQRO.I.H.G.S.X.
0.5683.90.95PtpAffx.204664.1.S1_atpmrna9183hypothetical protein-5e-52At1g49670NQRO.I.H.G.S.X.
0.5582.20.96PtpAffx.219689.1.S1_atpmrna35664hypothetical protein-3e-41At5g35560DENN (AEX-3) domain-containing proteinO.I.H.G.S.X.
0.5078.60.94PtpAffx.33375.3.S1_a_atCK090687hypothetical protein-7e-12At1g75980-O.I.H.G.S.X.
0.2645.20.95PtpAffx.41142.2.S1_atCV235220hypothetical protein-2e-3At2g38450-O.I.H.G.S.X.
0.2340.50.95PtpAffx.88561.2.A1_s_atCV264473hypothetical protein-2e+0At1g32370TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)O.I.H.G.S.X.
0.1525.30.96PtpAffx.119791.1.S1_s_atCX656015hypothetical protein-2e-18At1g06900catalytic/ metal ion binding / metalloendopeptidase/ zinc ion bindingO.I.H.G.S.X.
0.1118.10.95PtpAffx.152594.1.S1_atDN496609--2e+0At5g10970zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.393.7GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.791.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.389.8GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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