CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.30368.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g76180: ERD14 (EARLY RESPONSE TO DEHYDRATION 14) (HF=1e-1)

Module size 6 genes

NF 0.42

%ile 70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.96 PtpAffx.30368.1.S1_at CV254627 hypothetical protein - 1e-1 At1g76180 ERD14 (EARLY RESPONSE TO DEHYDRATION 14) O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.14629.1.S1_at DN496142 f-box family protein /// f-box family protein - 2e-1 At2g02870 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.46 73.7 0.97 PtpAffx.7528.1.S1_at CV270873 hypothetical protein - 6e-10 At4g35980 unknown protein O.I. H.G. S.X.
0.44 71.9 0.96 Ptp.7060.1.A1_x_at CV262139 hypothetical protein - 9e-27 At1g23290 RPL27AB O.I. H.G. S.X.
0.44 71.9 0.96 Ptp.5696.1.S1_s_at CV240717 hypothetical protein - 5e-41 At2g19830 SNF7.2 O.I. H.G. S.X.
0.21 36.5 0.96 PtpAffx.12741.1.A1_at CV234093 - - 8e-2 At4g08230 glycine-rich protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.95	PtpAffx.202450.1.S1_at	pmrna4906	hypothetical protein	-	7e-19	At3g24740	-	O.I.	H.G.	S.X.
0.60	86.0	0.96	PtpAffx.18096.1.A1_at	CV261250	-	-	1e-6	At1g78800	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.
0.50	78.6	0.93	PtpAffx.154332.1.S1_at	AJ779710	-	-	2e+0	Atmg01300	-	O.I.	H.G.	S.X.
0.43	69.7	0.95	PtpAffx.1060.1.A1_at	CV253420	-	-	9e-5	At2g29070	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.13928.1.S1_at	CV258030	-	-	4e-10	At5g06830	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.96	PtpAffx.3590.1.S1_at	CV279299	hypothetical protein	-	1e-31	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	O.I.	H.G.	S.X.
0.38	63.7	0.95	PtpAffx.99107.3.A1_s_at	CV240653	hypothetical protein	-	6e-64	At4g19640	ARA7	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.3872.1.S1_a_at	CV262411	hypothetical protein	-	1e-11	At5g47120	ATBI1 (BAX INHIBITOR 1)	O.I.	H.G.	S.X.
0.35	59.7	0.95	PtpAffx.36802.1.S1_at	BP936440	hypothetical protein	-	2e-44	At3g17000	UBC32 (ubiquitin-conjugating enzyme 32)	O.I.	H.G.	S.X.
0.33	57.5	0.95	Ptp.4197.1.S1_s_at	DN500268	hypothetical protein	-	6e-43	At5g62530	ALDH12A1	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.212839.1.S1_at	pmrna25131	hypothetical protein	-	1e-1	At5g63280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.32	55.2	0.95	PtpAffx.5281.2.S1_at	CK089008	-	-	4e-75	At2g42790	CSY3 (citrate synthase 3)	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.112859.1.A1_s_at	BP933614	hypothetical protein	-	6e-1	At3g62840	-	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.108517.1.A1_at	CV236445	hypothetical protein	-	3e-14	At5g35460	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.96	Ptp.3625.1.A1_at	CV267089	hypothetical protein	-	2e-12	At3g07560	PEX13 (PEROXIN 13)	O.I.	H.G.	S.X.
0.27	47.1	0.97	Ptp.6541.1.S1_a_at	CV227360	hypothetical protein	-	1e-32	At1g63290	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.86153.1.A1_at	CA821472	hypothetical protein	-	7e-4	At2g02040	PTR2 (PEPTIDE TRANSPORTER 2)	O.I.	H.G.	S.X.
0.25	43.6	0.96	PtpAffx.121458.1.A1_s_at	CV239175	hypothetical protein	-	3e-14	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.8 98.0 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7 85.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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