Co-expression analysis

Gene ID	PtpAffx.30368.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g76180: ERD14 (EARLY RESPONSE TO DEHYDRATION 14) (HF=1e-1)
Module size	6 genes
NF	0.42
%ile	70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.96	PtpAffx.30368.1.S1_at	CV254627	hypothetical protein	-	1e-1	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.14629.1.S1_at	DN496142	f-box family protein /// f-box family protein	-	2e-1	At2g02870	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	PtpAffx.7528.1.S1_at	CV270873	hypothetical protein	-	6e-10	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.7060.1.A1_x_at	CV262139	hypothetical protein	-	9e-27	At1g23290	RPL27AB	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.5696.1.S1_s_at	CV240717	hypothetical protein	-	5e-41	At2g19830	SNF7.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	PtpAffx.12741.1.A1_at	CV234093	-	-	8e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.0	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.133323.1.S1_at, orthologous to the query gene, PtpAffx.30368.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.6	TaAffx.133323.1.S1_at	At1g76180	-	-	3e-1	At5g42655	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.30680.2.S1_a_at	At1g76180	-	-	2e-2	At2g40670	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.72723.1.S1_at	At1g76180	-	-	7e+0	At5g56170	-	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.7465.2.S1_at	At1g76180	-	-	1e+0	At3g42940	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.107098.1.S1_at	At1g76180	-	-	3e+0	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.72723.1.S1_s_at	At1g76180	-	-	7e+0	At5g56170	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.29034.1.A1_at	At1g76180	-	-	1e-6	At3g07440	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.6446.2.S1_at	At1g76180	-	-	3e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	TaAffx.92161.1.S1_at	At1g76180	-	-	1e-1	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	TaAffx.72133.2.S1_at	At1g76180	-	-	4e+0	At2g32580	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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