Co-expression analysis

Gene ID	PtpAffx.30368.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g76180: ERD14 (EARLY RESPONSE TO DEHYDRATION 14) (HF=1e-1)
Module size	6 genes
NF	0.42
%ile	70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.96	PtpAffx.30368.1.S1_at	CV254627	hypothetical protein	-	1e-1	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.14629.1.S1_at	DN496142	f-box family protein /// f-box family protein	-	2e-1	At2g02870	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	PtpAffx.7528.1.S1_at	CV270873	hypothetical protein	-	6e-10	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.7060.1.A1_x_at	CV262139	hypothetical protein	-	9e-27	At1g23290	RPL27AB	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.5696.1.S1_s_at	CV240717	hypothetical protein	-	5e-41	At2g19830	SNF7.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	PtpAffx.12741.1.A1_at	CV234093	-	-	8e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.0	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, HU08A18u_at, orthologous to the query gene, PtpAffx.30368.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	HU08A18u_at	At1g76180	-	-	4e+0	At5g46560	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	HW09E23u_at	At1g76180	-	-	4e+0	At2g20690	lumazine-binding family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig10603_at	At1g76180	-	-	4e+0	At5g66170	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig17529_at	At1g76180	-	-	3e-2	At1g72125	transporter	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig11931_at	At1g76180	-	-	1e+0	At5g21910	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig19410_at	At1g76180	-	-	1e+1	At5g49420	MADS-box protein (AGL84)	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig8964_at	At1g76180	-	-	2e-2	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig18530_s_at	At1g76180	-	-	5e+0	At5g46620	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig25424_at	At1g76180	-	-	5e+0	At5g64750	ABR1 (ABA REPRESSOR1)	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig8593_s_at	At1g76180	-	-	2e+0	At3g17090	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig8835_at	At1g76180	-	-	1e-7	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig7287_at	At1g76180	-	-	6e-5	At2g24850	TAT3 (TYROSINE AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig4710_at	At1g76180	-	-	3e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig4707_x_at	At1g76180	-	-	5e+0	At2g35900	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	HU14O09u_at	At1g76180	-	-	5e+0	At1g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig4156_s_at	At1g76180	-	-	2e-39	At1g10730	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig3569_at	At1g76180	-	-	7e-18	At1g69620	RPL34 (RIBOSOMAL PROTEIN L34)	O.I.	H.G.	S.X.	Please select
0.05	4.1	rbaal35o19_s_at	At1g76180	-	-	4e+0	At5g58560	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig7324_s_at	At1g76180	-	-	1e-36	At4g26570	ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig21112_at	At1g76180	-	-	6e+0	At5g23360	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.02	1.8	Contig8615_at	At1g76180	-	-	2e+0	At5g24870	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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