CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.30368.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g76180: ERD14 (EARLY RESPONSE TO DEHYDRATION 14) (HF=1e-1)

Module size 6 genes

NF 0.42

%ile 70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.96 PtpAffx.30368.1.S1_at CV254627 hypothetical protein - 1e-1 At1g76180 ERD14 (EARLY RESPONSE TO DEHYDRATION 14) O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.14629.1.S1_at DN496142 f-box family protein /// f-box family protein - 2e-1 At2g02870 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.46 73.7 0.97 PtpAffx.7528.1.S1_at CV270873 hypothetical protein - 6e-10 At4g35980 unknown protein O.I. H.G. S.X.
0.44 71.9 0.96 Ptp.7060.1.A1_x_at CV262139 hypothetical protein - 9e-27 At1g23290 RPL27AB O.I. H.G. S.X.
0.44 71.9 0.96 Ptp.5696.1.S1_s_at CV240717 hypothetical protein - 5e-41 At2g19830 SNF7.2 O.I. H.G. S.X.
0.21 36.5 0.96 PtpAffx.12741.1.A1_at CV234093 - - 8e-2 At4g08230 glycine-rich protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.8 98.0 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7 85.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.11289.1.S1_at, orthologous to the query gene, PtpAffx.30368.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 HgAffx.11289.1.S1_at At1g76180 - - 1e+0 At3g03500 tatD-related deoxyribonuclease family protein O.I. H.G. S.X.
0.44 63.3 Gma.2534.1.S1_s_at At1g76180 Ubiquitin - 2e-140 At4g05320 UBQ10 (POLYUBIQUITIN 10) O.I. H.G. S.X.
0.44 63.3 GmaAffx.89861.1.S1_s_at At1g76180 Ubiquitin - 3e-127 At4g05320 UBQ10 (POLYUBIQUITIN 10) O.I. H.G. S.X.
0.32 43.7 GmaAffx.99.2.A1_s_at At1g76180 Translationally controlled tumor-like protein - 3e-1 At3g26670 - O.I. H.G. S.X.
0.21 26.6 GmaAffx.74485.1.A1_at At1g76180 - - 7e-2 At3g09800 protein binding O.I. H.G. S.X.
0.12 15.1 GmaAffx.91487.1.S1_x_at At1g76180 elongation factor 1A SMV resistance-related protein - 2e-114 At5g60390 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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