Co-expression analysis

Gene ID PtpAffx.30368.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g76180: ERD14 (EARLY RESPONSE TO DEHYDRATION 14) (HF=1e-1)
Module size 6 genes
NF 0.42
%ile 70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.96PtpAffx.30368.1.S1_atCV254627hypothetical protein-1e-1At1g76180ERD14 (EARLY RESPONSE TO DEHYDRATION 14)O.I.H.G.S.X.
0.5078.60.96PtpAffx.14629.1.S1_atDN496142f-box family protein /// f-box family protein-2e-1At2g02870kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.4673.70.97PtpAffx.7528.1.S1_atCV270873hypothetical protein-6e-10At4g35980unknown proteinO.I.H.G.S.X.
0.4471.90.96Ptp.7060.1.A1_x_atCV262139hypothetical protein-9e-27At1g23290RPL27ABO.I.H.G.S.X.
0.4471.90.96Ptp.5696.1.S1_s_atCV240717hypothetical protein-5e-41At2g19830SNF7.2O.I.H.G.S.X.
0.2136.50.96PtpAffx.12741.1.A1_atCV234093--8e-2At4g08230glycine-rich proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.0GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.897.4GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.785.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g76180, orthologous to the query gene, PtpAffx.30368.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g76180843950ERD14 (EARLY RESPONSE TO DEHYDRATION 14)Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.O.I.H.G.S.X.
0.5368.6At4g20260827773DREPP plasma membrane polypeptide family proteinEncodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.O.I.H.G.S.X.
0.4050.8At3g01520821122universal stress protein (USP) family proteinF:molecular_function unknown;P:N-terminal protein myristoylation, response to stress;C:plasma membrane;BPAMOFO.I.H.G.S.X.
0.3235.7At1g73030843634VPS46.2F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.2930.3At4g39090830064RD19 (RESPONSIVE TO DEHYDRATION 19)Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R–mediated resistance response.O.I.H.G.S.X.
0.2522.6At1g32410840134vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;MFPOO.I.H.G.S.X.
0.2522.6At3g51730824336saposin B domain-containing proteinF:molecular_function unknown;P:lipid metabolic process;C:vacuole;MOPO.I.H.G.S.X.
0.2420.7At1g01550839536BPS1 (BYPASS 1)BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signalO.I.H.G.S.X.
0.2319.3At2g45980819206unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2319.3At1g17080838278unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1912.7At3g46000823743ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)Encodes depolymerizing factor 2.O.I.H.G.S.X.
0.1811.4At5g22360832297ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.O.I.H.G.S.X.
0.157.8At3g55770824743LIM domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFO.I.H.G.S.X.

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