Co-expression analysis

Gene ID	PtpAffx.30246.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g25840: protein kinase family protein (HF=5e-32)
Module size	6 genes
NF	0.39
%ile	65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	PtpAffx.30246.1.A1_at	CV267148	hypothetical protein	-	5e-32	At3g25840	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.97	PtpAffx.206347.1.S1_at	pmrna12600	hypothetical protein	-	2e-4	At3g51650	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.14589.1.S1_at	BU892879	hypothetical protein	-	1e+0	At2g14160	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.7476.1.A1_s_at	CK111860	hypothetical protein	-	4e-42	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	Ptp.5592.1.S1_at	AF272572.1	hypothetical protein	-	5e-82	At5g38480	GRF3 (GENERAL REGULATORY FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.96	Ptp.1847.1.A1_s_at	CK093485	hypothetical protein	-	7e-17	At2g23070	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.9	98.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.4	82.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.3	81.0	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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