Co-expression analysis

Gene ID PtpAffx.30128.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g23910: cinnamoyl-CoA reductase-related (HF=3e+0)
Module size 6 genes
NF 0.60
%ile 90.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.92PtpAffx.30128.1.S1_atCV244941hypothetical protein-3e+0At2g23910cinnamoyl-CoA reductase-relatedO.I.H.G.S.X.
0.6791.10.91PtpAffx.69725.1.S1_a_atDN494612hypothetical protein-1e+0At2g41130basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5784.20.91PtpAffx.2103.1.A1_s_atCV246207hypothetical protein-3e-8At4g35320unknown proteinO.I.H.G.S.X.
0.5380.50.92PtpAffx.206254.1.S1_atpmrna12413hypothetical protein-1e-1At2g07280unknown proteinO.I.H.G.S.X.
0.4471.90.93PtpAffx.219602.1.S1_s_atpmrna35561hypothetical protein-6e-5At5g39390leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.3863.70.93PtpAffx.210959.1.S1_x_atpmrna21534hypothetical protein-8e-23At1g54570esterase/lipase/thioesterase family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7192.60.90PtpAffx.265.1.A1_atCV261776hypothetical protein-3e-89At2g47060serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.6791.10.87PtpAffx.32299.1.S1_atCV233360hypothetical protein-3e-14At4g38960zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.6791.10.90PtpAffx.211313.1.S1_atpmrna22182hypothetical protein-7e-4At1g52855unknown proteinO.I.H.G.S.X.
0.6187.00.89PtpAffx.221044.1.S1_s_atpmrna37596hypothetical protein-2e+0At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)O.I.H.G.S.X.
0.5380.50.90PtpAffx.208264.1.S1_atpmrna16444hypothetical protein-6e-1At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.5078.60.86PtpAffx.209372.1.S1_atpmrna18556hypothetical protein-5e-2At5g02790In2-1 protein, putativeO.I.H.G.S.X.
0.4673.70.83PtpAffx.213439.1.S1_atpmrna26275hypothetical protein-2e+0At5g24920AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5)O.I.H.G.S.X.
0.4067.00.90PtpAffx.224671.1.S1_atpmrna43448hypothetical protein-3e-5At5g39390leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.3863.70.92PtpAffx.224222.1.S1_s_atpmrna42573hypothetical protein-5e-5At5g44380FAD-binding domain-containing proteinO.I.H.G.S.X.
0.3559.70.87PtpAffx.212389.1.S1_atpmrna24271hypothetical protein-4e-3At1g34420leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.3559.70.86PtpAffx.207385.1.S1_atpmrna14647hypothetical protein-8e-1At3g50930BCS1 (CYTOCHROME BC1 SYNTHESIS)O.I.H.G.S.X.
0.3357.50.84PtpAffx.210127.1.S1_atpmrna19956hypothetical protein-7e-21At3g15850FAD5 (FATTY ACID DESATURASE 5)O.I.H.G.S.X.
0.3357.50.87PtpAffx.202287.1.S1_atpmrna4574hypothetical protein-9e-1At5g17740AAA-type ATPase family proteinO.I.H.G.S.X.
0.3357.50.90PtpAffx.37828.1.A1_atCV237381hypothetical protein-5e-13At1g23340unknown proteinO.I.H.G.S.X.
0.3255.20.85PtpAffx.57325.1.S1_atCV230318hypothetical protein-1e+0At5g64905PROPEP3 (Elicitor peptide 3 precursor)O.I.H.G.S.X.
0.3255.20.91PtpAffx.209373.1.S1_atpmrna18564hypothetical protein-3e-3At3g45740hydrolase family protein / HAD-superfamily proteinO.I.H.G.S.X.
0.3153.70.73PtpAffx.11916.2.S1_atCK107522MIKC mads-box transcription factor-1e-5At2g22540SVP (SHORT VEGETATIVE PHASE)O.I.H.G.S.X.
0.3153.70.86PtpAffx.204368.1.S1_atpmrna8585hypothetical protein-1e-11At4g35320unknown proteinO.I.H.G.S.X.
0.3052.00.85PtpAffx.90235.1.S1_atCK116216hypothetical protein-4e-4At1g17200integral membrane family proteinO.I.H.G.S.X.
0.3052.00.86PtpAffx.37666.2.S1_a_atCV239743pseudo response regulator-4e+0At5g60100APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3)O.I.H.G.S.X.
0.3052.00.90PtpAffx.56662.1.A1_atCV256721hypothetical protein-8e+0At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3052.00.88PtpAffx.204299.1.S1_atpmrna8454hypothetical protein-2e+0At4g22212-O.I.H.G.S.X.
0.2950.50.85PtpAffx.209624.1.S1_atpmrna19019hypothetical protein-2e-71At4g04320malonyl-CoA decarboxylase family proteinO.I.H.G.S.X.
0.2950.50.86Ptp.6754.1.S1_s_atCV260274hypothetical protein-2e+0At1g05291unknown proteinO.I.H.G.S.X.
0.2950.50.89PtpAffx.210083.1.S1_atpmrna19863hypothetical protein-4e+0At4g13300TPS13 (TERPENOID SYNTHASE 13)O.I.H.G.S.X.
0.2747.10.85PtpAffx.101418.1.A1_atCV265830hypothetical protein-3e-1At1g66230MYB20 (myb domain protein 20)O.I.H.G.S.X.
0.2747.10.88PtpAffx.100482.1.A1_s_atCV232377hypothetical protein-1e+1At4g35040bZIP transcription factor family proteinO.I.H.G.S.X.
0.2747.10.87PtpAffx.220521.1.S1_s_atpmrna36921hypothetical protein-3e-1At4g17700unknown proteinO.I.H.G.S.X.
0.2747.10.89PtpAffx.206165.1.S1_atpmrna12236hypothetical protein-3e-2At5g16980NADP-dependent oxidoreductase, putativeO.I.H.G.S.X.
0.2747.10.91PtpAffx.94576.1.A1_a_atCV282515hypothetical protein-4e-1At4g08320tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.2645.20.87PtpAffx.221871.1.S1_x_atpmrna38968hypothetical protein-2e-1At1g32585VQ motif-containing protein-relatedO.I.H.G.S.X.
0.2543.60.90PtpAffx.117004.2.S1_a_atCX174168hypothetical protein-3e-7At4g19410pectinacetylesterase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.098.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.096.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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