Co-expression analysis

Gene ID PtpAffx.30100.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g50690: leucine-rich repeat family protein (HF=7e-2)
Module size 7 genes
NF 0.48
%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.94PtpAffx.30100.1.S1_atCX174508hypothetical protein-7e-2At3g50690leucine-rich repeat family proteinO.I.H.G.S.X.
0.4471.90.94Ptp.5418.1.S1_atCK094795hypothetical protein-5e-34At2g25660emb2410 (embryo defective 2410)O.I.H.G.S.X.
0.4471.90.94PtpAffx.84672.1.S1_atCA824624hypothetical protein-6e-1At3g28420unknown proteinO.I.H.G.S.X.
0.4471.90.96Ptp.2082.1.S1_atCX173557hypothetical protein-5e-7At4g18120AML3 (ARABIDOPSIS MEI2-LIKE 3)O.I.H.G.S.X.
0.3863.70.92Ptp.811.1.A1_atCV244051histidine kinase cytokinin receptor-2e+0At1g64405unknown proteinO.I.H.G.S.X.
0.3863.70.93PtpAffx.1797.1.A1_a_atCV273810hypothetical protein-4e-5At2g01410-O.I.H.G.S.X.
0.2950.50.94Ptp.4498.1.S1_atBU827954--5e-1At3g02960copper-binding protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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