Co-expression analysis

Gene ID	PtpAffx.29726.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g13890: SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) (HF=1e-28)
Module size	6 genes
NF	0.42
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	1.00	PtpAffx.29726.1.A1_s_at	CV249620	hypothetical protein	-	1e-28	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	1.00	PtpAffx.163121.1.S1_at	BU873063	hypothetical protein	-	7e-6	At2g36190	AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	1.00	PtpAffx.208626.1.S1_at	pmrna17122	lysine/histidine transporter	-	5e-20	At5g40780	LHT1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	1.00	PtpAffx.200575.1.S1_at	pmrna1145	hypothetical protein	-	2e-1	At3g60730	pectinesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	1.00	PtpAffx.225734.1.S1_s_at	pmrna45303	hypothetical protein	-	3e-1	At5g61680	pectinesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	1.00	PtpAffx.213910.1.S1_at	pmrna27123	hypothetical protein	-	3e-12	At3g01270	pectate lyase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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