Co-expression analysis

Gene ID	PtpAffx.29282.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g27450: MK (MEVALONATE KINASE) (HF=9e-13)
Module size	6 genes
NF	0.37
%ile	63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.96	PtpAffx.29282.1.A1_at	BP934395	hypothetical protein	-	9e-13	At5g27450	MK (MEVALONATE KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	Ptp.7028.1.S1_s_at	DN488937	hypothetical protein	-	6e-6	At1g13580	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	Ptp.7715.1.S1_a_at	DN498741	hypothetical protein	-	2e-46	At5g24520	TTG1 (TRANSPARENT TESTA GLABRA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.140860.1.A1_at	CV269162	-	-	8e-12	At1g32120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.95	Ptp.777.1.A1_at	CV236864	-	-	7e+0	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	Ptp.7621.1.S1_at	DN495655	hypothetical protein	-	2e-9	At3g24210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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