Co-expression analysis

Gene ID	PtpAffx.29056.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g12010: unknown protein (HF=6e-6)
Module size	8 genes
NF	0.11
%ile	22.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	0.93	PtpAffx.29056.1.S1_at	DN500805	hypothetical protein	-	6e-6	At5g12010	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	Ptp.7021.1.S1_s_at	CV273623	hypothetical protein	-	7e-18	At3g57785	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	PtpAffx.129776.1.S1_at	BU823997	-	-	3e-1	At4g28703	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.93	PtpAffx.53149.1.S1_at	DN484302	hypothetical protein	-	8e-16	At1g04960	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.93	PtpAffx.211958.1.S1_at	pmrna23479	hypothetical protein	-	3e+0	At4g35580	NTL9 (NAC transcription factor-like 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.94	PtpAffx.23537.1.S1_at	CF234126	hypothetical protein	-	2e-41	At1g09780	2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.93	PtpAffx.17902.1.A1_at	CV229372	hypothetical protein	-	1e-16	At1g29690	CAD1 (constitutively activated cell death 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.94	PtpAffx.119564.1.S1_at	CX656976	hypothetical protein	-	1e-1	At5g05180	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1	95.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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