Co-expression analysis

Gene ID	PtpAffx.28903.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g20110: dynein light chain, putative (HF=2e-1)
Module size	20 genes
NF	0.25
%ile	45.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.86	PtpAffx.28903.1.S1_at	DN496627	hypothetical protein	-	2e-1	At5g20110	dynein light chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.93	Ptp.2929.1.S1_at	BU835620	hypothetical protein	-	8e+0	At5g44580	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.90	PtpAffx.44303.2.A1_a_at	CA930623	hypothetical protein	-	2e-9	At1g04520	PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.90	Ptp.6498.2.S1_at	AI162148	hypothetical protein	-	1e+0	At5g36280	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.89	Ptp.5105.1.S1_s_at	CV242023	hypothetical protein	-	2e-10	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.89	Ptp.7671.1.A1_at	DN498614	hypothetical protein	-	1e+0	At5g64250	2-nitropropane dioxygenase family / NPD family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	Ptp.3207.1.S1_at	CK093422	hypothetical protein	-	7e-13	At2g35680	dual specificity protein phosphatase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.93	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.91	Ptp.6972.1.S1_at	DN498652	ferroportin protein family	-	1e-3	At5g03570	ATIREG2 (IRON-REGULATED PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	Ptp.1919.1.A1_at	CK092679	-	-	4e-2	At5g40180	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	Ptp.3817.1.S1_at	BU887056	hypothetical protein	-	1e+0	At3g11620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.89	Ptp.5502.1.S1_at	BU832753	hypothetical protein	-	1e-63	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.90	Ptp.7772.1.S1_at	DN499008	hypothetical protein	-	2e+0	At2g35660	CTF2A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.92	PtpAffx.44748.1.S1_s_at	DN495834	hypothetical protein	-	3e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.94	PtpAffx.132126.1.A1_at	DN489522	-	-	2e+0	At3g21371	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.94	PtpAffx.41755.1.S1_at	DN499227	hypothetical protein	-	3e-2	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	Ptp.7765.1.S1_at	BU835089	-	-	8e+0	At5g35470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.92	Ptp.6678.1.S1_at	CV230067	hypothetical protein	-	2e+0	At1g34910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.91	PtpAffx.46092.1.S1_at	CX170150	-	-	7e-24	At2g14045	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.94	Ptp.7603.1.S1_at	DN494879	-	-	6e-2	At1g31120	KUP10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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